View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7349_high_2 (Length: 603)
Name: NF7349_high_2
Description: NF7349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7349_high_2 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 518; Significance: 0; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 53 - 602
Target Start/End: Complemental strand, 340093 - 339544
Alignment:
| Q |
53 |
gtttctacgtcaacccttactctagccattttcctatgaccatgagtaatgaagtcttttaattaattaaacaaccgttcagtaccttatgagtgttatt |
152 |
Q |
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| T |
340093 |
gtttctacgtcaacccttactctagccattttcctatgaccatgagtaatgaagtcttttaattaattaaacaaccgtccagtaccttatgagtgttatt |
339994 |
T |
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| Q |
153 |
ctggactataggcatgtttcaaaaaactaacagaaacattgattaattctatgagtatcagacatatttcagatgtagagaaagatggaacatgtgactt |
252 |
Q |
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| T |
339993 |
ctggattataggcatgtttcaaaaaactaacagaaacatagattaattctatgagtatcagacatctttcagatgtagagaaagatggaacatgggactt |
339894 |
T |
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| Q |
253 |
aaactcagccttttagacttgggcaataattaaagctaaagatgcataactcaccattacagagccaggtggctgggactgaatagccagataagttggg |
352 |
Q |
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| T |
339893 |
aaactcagtcttttagacctgggcaataattaaagctaaagatgcataactcaccattacagagccaggtggctgggactgaatagccagataagttggg |
339794 |
T |
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| Q |
353 |
cctccgccacgaccaacactccctccacggccatggaataaagtaaccttaataccgtactctttgcaagcagccactacatcctcttgagctttgtaaa |
452 |
Q |
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| T |
339793 |
cctccgccacgaccaacactccctccacggccatggaataaagtaaccttaataccgtactctttgcaagcagccactacatcctcttgagctttgtaaa |
339694 |
T |
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| Q |
453 |
gttcccaagcagcggtaaagcgcccagcatctttaccagaatcagaatacccaaccattacctgcatataggcatatataacattaacacacgcattctc |
552 |
Q |
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| T |
339693 |
gttcccaagcagcggtaaagcgcccagcatctttaccagaatcagaatacccaaccattacctgcatataggcatatataacattaacacacgcattctc |
339594 |
T |
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| Q |
553 |
ggtaataccataacataaatgaaactgccattattataaacaacctcttg |
602 |
Q |
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| T |
339593 |
ggtaataccataacataaatgaaactgccattattataaataacctcttg |
339544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 117; Significance: 3e-59; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 294 - 518
Target Start/End: Original strand, 42189229 - 42189453
Alignment:
| Q |
294 |
atgcataactcaccattacagagccaggtggctgggactgaatagccagataagttgggcctccgccacgaccaacactccctccacggccatggaataa |
393 |
Q |
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||||||||| ||||| ||||| |||||||| |||||||||||||||||||| || ||||| ||||| ||||||| ||| ||||| ||||||||||| | |
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| T |
42189229 |
atgcataacctaccatcacagatccaggtggttgggactgaatagccagatatgtagggccaccgcctcgaccaatactgcctccgcggccatggaacag |
42189328 |
T |
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| Q |
394 |
agtaaccttaataccgtactctttgcaagcagccactacatcctcttgagctttgtaaagttcccaagcagcggtaaagcgcccagcatctttaccagaa |
493 |
Q |
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| T |
42189329 |
tgtaactttaataccataatcattgcaagcagctacaacatcctcctgagctttgtaaagttcccaagcagcagtgaagcggccagcatctttaccagaa |
42189428 |
T |
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| Q |
494 |
tcagaatacccaaccattacctgca |
518 |
Q |
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| T |
42189429 |
tcagaatatccaaccataacctgca |
42189453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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