View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7349_low_11 (Length: 330)
Name: NF7349_low_11
Description: NF7349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7349_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 2838505 - 2838821
Alignment:
| Q |
1 |
agaacatcagactcagtatcataaaaggatctatgcatatcattgcacacttgatccttgtgttgactgttttcctccacctcttctccatggtctgcat |
100 |
Q |
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| T |
2838505 |
agaacatcagactcagtatcataaaaggatctatgcatatcattgcacgcttgatccttgtgttgactgttttcctccacctcttctccatggtctgcat |
2838604 |
T |
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| Q |
101 |
cagcgcaatctttcttcacatttgatacgatgctttctgcctgtgatggatcatcacaagtttcaaatgaaagtgatggcctataactttcaaattcctt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
2838605 |
cagcgcaatctttcttcacatttgatacgatgctttctgcctgtgatggatcatcacaagtttcaaatgaaagtgatggcctataactttcaagttcctt |
2838704 |
T |
|
| Q |
201 |
ttccaaaaagagattctccttttcccttcttataagaatctcttgcataatattcatctcttcttcatcataagcagctctttcttcaattaacctctca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2838705 |
ttccaaaaagagattctccttttcccttcttataagaatctcttgcataatattcatctcttcttcatcataagcagctctttcttcaattaacctctca |
2838804 |
T |
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| Q |
301 |
tattgtctgatgtccat |
317 |
Q |
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|||||||| || ||||| |
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| T |
2838805 |
tattgtctcatttccat |
2838821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 179 - 317
Target Start/End: Original strand, 2842784 - 2842922
Alignment:
| Q |
179 |
gcctataactttcaaattccttttccaaaaagagattctccttttcccttcttataagaatctcttgcataatattcatctcttcttcatcataagcagc |
278 |
Q |
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||||| || |||||| ||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
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| T |
2842784 |
gcctaaaagtttcaagttccttttccaaaaaaagattttccctttcccttcttataagaatctcttgcataatattcatctcttcttcatcataagaaac |
2842883 |
T |
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| Q |
279 |
tctttcttcaattaacctctcatattgtctgatgtccat |
317 |
Q |
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| T |
2842884 |
tctttcttcaattaacctctcgtattgtctcatttccat |
2842922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 2842531 - 2842573
Alignment:
| Q |
1 |
agaacatcagactcagtatcataaaaggatctatgcatatcat |
43 |
Q |
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||||||||||||||||||||||||||||| ||||||| ||||| |
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| T |
2842531 |
agaacatcagactcagtatcataaaaggagctatgcaaatcat |
2842573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 175
Target Start/End: Original strand, 2842671 - 2842705
Alignment:
| Q |
141 |
ctgtgatggatcatcacaagtttcaaatgaaagtg |
175 |
Q |
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| T |
2842671 |
ctgtgatggatcatcacatgtttcaaatgaaagtg |
2842705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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