View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7349_low_12 (Length: 297)
Name: NF7349_low_12
Description: NF7349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7349_low_12 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 5 - 278
Target Start/End: Original strand, 30946360 - 30946633
Alignment:
| Q |
5 |
agtttggagttacagagtaagactttctcccctacttggaattccnnnnnnngaatattggcatcatgccatttattaaccttggacttgtaacttctgc |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30946360 |
agtttggagttacagagtaagactttctcccctacttggaattcctttttttgaatattggcatcatgccatttattaaccttggacttgtaacttctgc |
30946459 |
T |
|
| Q |
105 |
attttcacaagtaataagactattttcttctaattcatggagttgcagcattctgcgactcccaattatttgcaagtccatgttaagtttctttcaagcc |
204 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30946460 |
attttcataagtaataagactattttcttctaattcatggagttgcagcattttgcgactcccaattatttgcaagtccatgttaagtttctttcaagcc |
30946559 |
T |
|
| Q |
205 |
aacaaggctttttgttgtaattcagatattgcaagtggtgttttgtatgcagccttatgtgcccatagatcatc |
278 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30946560 |
aacaagggtttttgttgtaattcagatattccaagtggtgttttgtatgcagccttatgtgcccatagatcatc |
30946633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 5 - 229
Target Start/End: Original strand, 30952265 - 30952489
Alignment:
| Q |
5 |
agtttggagttacagagtaagactttctcccctacttggaattccnnnnnnngaatattggcatcatgccatttattaaccttggacttgt-aacttctg |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
30952265 |
agtttggagttacagagtaagactttctcccccacttggaattccttttttcgaatcttggcatcatgccatttcctaaccttggacttgtaaacttcta |
30952364 |
T |
|
| Q |
104 |
cattttcacaagtaataagactattttcttctaattcatggagttgcagcattctgcgactcccaattatttgcaagtccatgttaagtttctttcaagc |
203 |
Q |
| |
|
||||| | ||||||||||||||||||||||||||| |||||||||||||||| | |||||| | | |||||||||||| ||||||||||||| ||| |
|
|
| T |
30952365 |
aatttt-ataagtaataagactattttcttctaatttatggagttgcagcatttcgagactcctagtattttgcaagtccaagttaagtttctttagagc |
30952463 |
T |
|
| Q |
204 |
caacaaggctttttgttgtaattcag |
229 |
Q |
| |
|
|||||||||||| |||||| |||||| |
|
|
| T |
30952464 |
caacaaggctttgtgttgtgattcag |
30952489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 278
Target Start/End: Original strand, 30952530 - 30952580
Alignment:
| Q |
228 |
agatattgcaagtggtgttttgtatgcagccttatgtgcccatagatcatc |
278 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||| |||||||||| |||| |
|
|
| T |
30952530 |
agatattccaagtggtgttttgtatgcagccctatatgcccatagagcatc |
30952580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 198
Target Start/End: Original strand, 13208305 - 13208438
Alignment:
| Q |
66 |
catcatgccatttattaaccttggacttgtaacttc-tgcattttcacaagtaataagactattttcttctaattcatggagttgcagcattctgcgact |
164 |
Q |
| |
|
||||||| ||||| ||||| |||||||| ||| || |||||| || |||||||||| |||| |||||||| ||||||||||||| |||||| | | |
|
|
| T |
13208305 |
catcatgtcatttcttaactttggacttttaaatttgtgcattctcctaagtaataagtctatgctcttctaactcatggagttgcatcattctacaaga |
13208404 |
T |
|
| Q |
165 |
cccaattatttgcaagtccatgttaagtttcttt |
198 |
Q |
| |
|
|||| | |||||||||||| |||||||||||| |
|
|
| T |
13208405 |
accaactttttgcaagtccaatttaagtttcttt |
13208438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University