View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7349_low_13 (Length: 277)
Name: NF7349_low_13
Description: NF7349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7349_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 9 - 259
Target Start/End: Complemental strand, 7947094 - 7946844
Alignment:
| Q |
9 |
atgagatggacatcagttagcatgtttctcaaccatcttcgtgatagttggagatgatggatctacgcagtttcctccagctagtacaagtggaatgcaa |
108 |
Q |
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| T |
7947094 |
atgagattgacataagttagcatgtttctcaaccatcttcgtgatagttggagatgatggatctacgcagtttcctccagctagtacaagtggaatgcaa |
7946995 |
T |
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| Q |
109 |
cgacagttgcttgagggacatggtggcatctgaaatggcgaacaaatacccgaacaatcttctgcacccttcatcatcggaaatattgctgtaaatgaca |
208 |
Q |
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| T |
7946994 |
cgacagttgcttgagggacatggtggcatctgaaatggcgaacaaatacccgaacattcttctgcacccttcatcatcggaaatattgctgtaaatgaca |
7946895 |
T |
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| Q |
209 |
aagacaattagagatggaacaataaaatatatgataaattttagagaaagt |
259 |
Q |
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| T |
7946894 |
aagacaattagagatggaacaataaaatatatgataaattttagagaaagt |
7946844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 9 - 230
Target Start/End: Complemental strand, 7941543 - 7941319
Alignment:
| Q |
9 |
atgagatggacatcagttagcatgtttctcaaccatcttcgtgatagttggagatgatggatctacgcagtttcctccagctagtacaagtggaatgcaa |
108 |
Q |
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| T |
7941543 |
atgagattgacataagttagcatgtttctcaaccatcttcgtgatagttggagatgatggatctacgcagtttcctccaattagtataacaggaatgcaa |
7941444 |
T |
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| Q |
109 |
cgacagttgcttgagggacatggtggcatctgaaatggcgaacaaatacccgaacaatcttctgcacccttcatcatcggaaatat---tgctgtaaatg |
205 |
Q |
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| T |
7941443 |
cggcagctgcttgaaggacatggtggcatctcaaacggcgaacaaatacccaaacaatcttctgctgccttcatcatcggaaatattaatgctgtaaatt |
7941344 |
T |
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| Q |
206 |
acaaagacaattagagatggaacaa |
230 |
Q |
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| T |
7941343 |
acaaagacaattagagatggaacaa |
7941319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 168
Target Start/End: Complemental strand, 7950504 - 7950353
Alignment:
| Q |
17 |
gacatcagttagcatgtttctcaaccatcttcgtgatagttggagatgatggatctacgcagtttcctccagctagtacaagtggaatgcaacgacagtt |
116 |
Q |
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| T |
7950504 |
gacataagttaggatgttcctcaaccatcttcataacagttggagatgatggatatgtacaataacctgcaactagtccaatagggatgcaacgacaatc |
7950405 |
T |
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| Q |
117 |
gcttgagggacatggtggcatctgaaatggcgaacaaatacccgaacaatct |
168 |
Q |
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| T |
7950404 |
gctagaacgacatggtggcatctcaaatggtgaacaagcacccgaacaatct |
7950353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 103 - 173
Target Start/End: Original strand, 6786005 - 6786075
Alignment:
| Q |
103 |
atgcaacgacagttgcttgagggacatggtggcatctgaaatggcgaacaaatacccgaacaatcttctgc |
173 |
Q |
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| T |
6786005 |
atgcaacgacaatcgctagagcgacatggtggcatctcaaatggcgaacaaatacccgaacagtctgctgc |
6786075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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