View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7349_low_16 (Length: 246)
Name: NF7349_low_16
Description: NF7349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7349_low_16 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 41637178 - 41636949
Alignment:
| Q |
1 |
ttttttgaaaggttatttggttttgcgtcaatattaagagatatttggttaaagagaaaggaaggaacaagtgaacggttagaagtggaaaagagaagga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41637178 |
ttttttgaaaggttatttggttttgcgtcaatattaagagatatttggttaaagagaaaggaaggaacaagtgaacggttagaagtggaaaagagaagga |
41637079 |
T |
|
| Q |
101 |
atggaaagttgatgttgaagagtgaaagagagtgtggaattgcttgttgttgaagaaagtgttgtaagatgagttagttttggaagtgaacttttgaatt |
200 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41637078 |
atggagagttgatgttgaagagtgaa--agagtgtggaattgcttgttgttgaagaaagtgttgtaagatgagttagttttggaagtgaacttttgaatt |
41636981 |
T |
|
| Q |
201 |
ttgaaagacagtttgaattaggtaaatgatgt |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
41636980 |
ttgaaagacagtttgaattaggtaaatgatgt |
41636949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University