View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7349_low_18 (Length: 238)
Name: NF7349_low_18
Description: NF7349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7349_low_18 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 18 - 225
Target Start/End: Complemental strand, 3924419 - 3924212
Alignment:
| Q |
18 |
ttttctccactaattcaagtgactcaaagtcttcaatccctttattcatttgtttaaacctttgctccatcatcatcaacttcaacttcaaccaattctg |
117 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||| |
|
|
| T |
3924419 |
ttttctccactaattcaaatgactcaaagtcttcaatccctttattcatttgtttgaacctttcctccatcatcatcaaattcaacttcaaccaattctg |
3924320 |
T |
|
| Q |
118 |
gcttaatctcctctaactgctgcaaaacttgtttgacttcaggcctagcagaaagtgatggatcaacacaatgcaaagctaatttcaatgtattaagaag |
217 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3924319 |
gcttaatctcctctaactgctgcaaaatttgtttaacttcaggcctagcagaaggtgatggatcaacacaatgcaaagctaatttcaatgtattaagaag |
3924220 |
T |
|
| Q |
218 |
ttcatctc |
225 |
Q |
| |
|
|||||||| |
|
|
| T |
3924219 |
ttcatctc |
3924212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 18 - 225
Target Start/End: Complemental strand, 3908403 - 3908196
Alignment:
| Q |
18 |
ttttctccactaattcaagtgactcaaagtcttcaatccctttattcatttgtttaaacctttgctccatcatcatcaacttcaacttcaaccaattctg |
117 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3908403 |
ttttctccactatttcaagtgactcaaagtcttccatccatttattcatttgtttgaacctttgctccatcatcatcaacttcaacttcaaccaattctg |
3908304 |
T |
|
| Q |
118 |
gcttaatctcctctaactgctgcaaaacttgtttgacttcaggcctagcagaaagtgatggatcaacacaatgcaaagctaatttcaatgtattaagaag |
217 |
Q |
| |
|
| |||||||| ||||| ||||||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3908303 |
gtttaatctcttctaattgctgcaaaacttgtttaacctcaggcctagcagaaggtgatggatcaacacaatgcaaagctaatttcaatgtattaagaag |
3908204 |
T |
|
| Q |
218 |
ttcatctc |
225 |
Q |
| |
|
|||||||| |
|
|
| T |
3908203 |
ttcatctc |
3908196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University