View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7349_low_5 (Length: 477)
Name: NF7349_low_5
Description: NF7349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7349_low_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 1 - 470
Target Start/End: Original strand, 7410017 - 7410485
Alignment:
| Q |
1 |
aaggctaattaggaaagtttgtttcaatacaatccatactttgaaagtcgtgaaaatattgttagtaaacatataactcaaattaaggataaagtgaaac |
100 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7410017 |
aaggctaattatgagagtttgtttcaatacaatccatactttgaaagtcgtgaaaatattgttagtaaacatataactcaaattaaggataaagtgaaac |
7410116 |
T |
|
| Q |
101 |
aaagtcttttttctaaaagaagaaccaagatttccacaaaagaaaatgtctcccaatttgtaattgtacactgaaatccagcataaaaggccactaatgc |
200 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
7410117 |
aaagtctttt-tctaaaagaagaaccaagatttccacaaaagaaaatgtctcccaatttgtaattctacactgaaatccagcataaaaggccactaatgc |
7410215 |
T |
|
| Q |
201 |
taccttaaaaagtgattctaccacttacctccttatctagatctctctcttcatatctctttacattttaattgtaaaataaaactatatatcggcgagt |
300 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7410216 |
taccttaaaaagtgattccaccacttacctccttatctagatctctctcttcttatctctttacattttaattgtaaaataaaactatatatcggcgagt |
7410315 |
T |
|
| Q |
301 |
tatgcatattaaaagctgtaaaaataggtactaataattgtttatgcagaagaaactaattacgtctctctcatttgcacaactcacatgcaatttctac |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7410316 |
tatgcatattaaaagctgtaaaaataggtactaataattgtttatgcagaagaaactaattatgtctctctcatttgcacaactcacatgcaatttctac |
7410415 |
T |
|
| Q |
401 |
agctataggtgcagtaaagtgtcctgtgactggcattgtttattttaggaccactgtgtgtgcgtgtgtg |
470 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |
|
|
| T |
7410416 |
agctataggtgcagtaaagtgtcctgtgactggctttgtttattttaggaccactgtgtgtgtgtgtgtg |
7410485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University