View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7349_low_6 (Length: 475)
Name: NF7349_low_6
Description: NF7349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7349_low_6 |
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| [»] chr7 (2 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] scaffold0576 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 436; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 7 - 475
Target Start/End: Complemental strand, 14621156 - 14620696
Alignment:
| Q |
7 |
tttggtgttttaataatgtctgttacgtgtttgatgaaatgctaatgggaatgtgttgatgtgttgatgaaatggtttcttgttgtttgtagttataagg |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
14621156 |
tttggtgttttaataatgtctgttacgtgtttgatgaaatgctaatgggaatgtgttgatg--------aaatggtttcttgttgtttgtagttataagg |
14621065 |
T |
|
| Q |
107 |
aacggtttctttcgtcgttgccggctgctcgtcgtgcaagtgctgattttactcgtccggtttttatggctgttgctttttatttatgtgcaaagaaaca |
206 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14621064 |
aacggtttctttcttcgttgccggctgctcgtcgtgcaagtgctgattttactcgtccggtttttatggctgttgctttttatttatgtgcaaagaaaca |
14620965 |
T |
|
| Q |
207 |
taaggtacatttgtaataatctcaacgtaacacatagtatgtggttcgatattgtaatgatatgatttgtgattgttatttgcagctgaaagttgataag |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14620964 |
taaggtacatttgtaataatctcaacgtaacacatagtatgtggttcgatattgtaatgatatgatttgtgattgttatttgcagctgaaagttgataag |
14620865 |
T |
|
| Q |
307 |
attaagctgattgaactttgtggtacatctgaatctgaattttctagtgtaagtgttttatatgcaaaatgtacaatgaatctctagtgtgtgatgggtt |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14620864 |
attaagctgattgaactttgtggtacatctgaatctgaattttctagtgtaagtgttttatatgcaaaatgtacaatgaatctctagtgtgtgatgggtt |
14620765 |
T |
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| Q |
407 |
tattaggtttgtgagcggtgttaatgactttaaatgaattgtgaattggtgttgcaggtttctactact |
475 |
Q |
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| T |
14620764 |
tattaggtttgtgagcggtgttaatgactttaaatgaattgtgaattggtgttgcaggtttctactact |
14620696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 264 - 363
Target Start/End: Complemental strand, 2751204 - 2751105
Alignment:
| Q |
264 |
tgatatgatttgtgattgttatttgcagctgaaagttgataagattaagctgattgaactttgtggtacatctgaatctgaattttctagtgtaagtgtt |
363 |
Q |
| |
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|||||||||||||||||||| ||||||||| |||||||||||| ||||||| |||||| | | |||||||| | ||||||||||||| ||||||| |||| |
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| T |
2751204 |
tgatatgatttgtgattgttctttgcagctcaaagttgataaggttaagctaattgaagtatttggtacatatcaatctgaattttcaagtgtaattgtt |
2751105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 7 - 475
Target Start/End: Original strand, 17709031 - 17709500
Alignment:
| Q |
7 |
tttggtgttttaataatgtctgttacgtgtttgatgaaatgctaatgggaatgtgttgatgtgttgatgaaatggtttcttgttgtttgtagttataagg |
106 |
Q |
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|||| ||||| ||||| || ||||||||||||||| ||||||| ||| |||||||||||||| |||||||| |||||||||||||||||||||||||||| |
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| T |
17709031 |
tttgttgtttgaataacgtatgttacgtgtttgataaaatgctgatgtgaatgtgttgatgtcttgatgaagtggtttcttgttgtttgtagttataagg |
17709130 |
T |
|
| Q |
107 |
aacggtttctttcgtcgttgccggctgctcgtcgtgcaagtgctgattttactcgtccggtttttatggctgttgctttttatttatgtgcaaagaaaca |
206 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17709131 |
aacggtttctttcatcgttgccggctgctcgtcgtgcaagtgctgattttactcgtccggtttttatggctgttgctttttatttatgtgcaaagaaaca |
17709230 |
T |
|
| Q |
207 |
taaggtacatttgtaataatctcaacgtaa-cacatagtatgtggttcgatattgtaatgatatgatttgtgattgttatttgcagctgaaagttgataa |
305 |
Q |
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|||||||||||||||||||||| || | || |||| ||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||| |
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| T |
17709231 |
taaggtacatttgtaataatcttaatgcaaacacacagtatgtggttatatattgtaatgatatgatttatgattgttatttgcagctaaaagttgataa |
17709330 |
T |
|
| Q |
306 |
gattaagctgattgaactttgtggtacatctgaatctgaattttctagtgtaagtgttttatatgcaaaatgtacaatgaatctctagtgtgtgatgggt |
405 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |
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| T |
17709331 |
gattaagctgattgaactttgtggtacatctgaatctgaattttctagtgtaagtgttttatacgcaaaatgtacaatgaatctctaatgtgtgatgggt |
17709430 |
T |
|
| Q |
406 |
ttattaggtttgtgagcggtgttaatgactttaaatgaattgtgaattggtgttgcaggtttctactact |
475 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
17709431 |
ttattaggtttgtgagcggtgttaatgactttaaatgaattgtgaattggtgttgtaggtttctactact |
17709500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 260 - 363
Target Start/End: Original strand, 18204229 - 18204332
Alignment:
| Q |
260 |
gtaatgatatgatttgtgattgttatttgcagctgaaagttgataagattaagctgattgaactttgtggtacatctgaatctgaattttctagtgtaag |
359 |
Q |
| |
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|||||||||||||||||||||||| |||||| || |||||||||||||||||||| |||||| | | |||||||| ||||||| ||||||| ||||||| |
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| T |
18204229 |
gtaatgatatgatttgtgattgttctttgcaactcaaagttgataagattaagctaattgaagtatttggtacatatgaatcttaattttcaagtgtaat |
18204328 |
T |
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| Q |
360 |
tgtt |
363 |
Q |
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|||| |
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| T |
18204329 |
tgtt |
18204332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0576 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: scaffold0576
Description:
Target: scaffold0576; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 264 - 363
Target Start/End: Original strand, 5350 - 5449
Alignment:
| Q |
264 |
tgatatgatttgtgattgttatttgcagctgaaagttgataagattaagctgattgaactttgtggtacatctgaatctgaattttctagtgtaagtgtt |
363 |
Q |
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|||||||||||||||||||| ||||||||| |||||||||||| ||||||| |||||| | | |||||||| | ||||||||||||| ||||||| |||| |
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| T |
5350 |
tgatatgatttgtgattgttctttgcagctcaaagttgataaggttaagctaattgaagtatttggtacatatcaatctgaattttcaagtgtaattgtt |
5449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 264 - 363
Target Start/End: Original strand, 3734891 - 3734990
Alignment:
| Q |
264 |
tgatatgatttgtgattgttatttgcagctgaaagttgataagattaagctgattgaactttgtggtacatctgaatctgaattttctagtgtaagtgtt |
363 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||||||||||| ||||||| |||||| | | |||||||| | ||||||||||||| ||||||| |||| |
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| T |
3734891 |
tgatatgatttgtgattgttctttgcagctcaaagttgataaggttaagctaattgaagtatttggtacatatcaatctgaattttcaagtgtaattgtt |
3734990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 264 - 363
Target Start/End: Original strand, 15360366 - 15360465
Alignment:
| Q |
264 |
tgatatgatttgtgattgttatttgcagctgaaagttgataagattaagctgattgaactttgtggtacatctgaatctgaattttctagtgtaagtgtt |
363 |
Q |
| |
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|||||||||||||||||||| ||||||||| |||||||||||| ||||||| |||||| | | |||||||| | ||||||||||||| ||||||| |||| |
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| T |
15360366 |
tgatatgatttgtgattgttctttgcagctcaaagttgataaggttaagctaattgaagtatttggtacatatcaatctgaattttcaagtgtaattgtt |
15360465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 264 - 321
Target Start/End: Original strand, 28659216 - 28659273
Alignment:
| Q |
264 |
tgatatgatttgtgattgttatttgcagctgaaagttgataagattaagctgattgaa |
321 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||||||||||| ||||||| |||||| |
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| T |
28659216 |
tgatatgatttgtgattgttctttgcagctcaaagttgataaggttaagctaattgaa |
28659273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 264 - 321
Target Start/End: Original strand, 20265384 - 20265441
Alignment:
| Q |
264 |
tgatatgatttgtgattgttatttgcagctgaaagttgataagattaagctgattgaa |
321 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||||||||||| ||||||| |||||| |
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| T |
20265384 |
tgatatgatttgtgattgttctttgcagctcaaagttgataaggttaagctaattgaa |
20265441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 255 - 314
Target Start/End: Original strand, 4601345 - 4601404
Alignment:
| Q |
255 |
atattgtaatgatatgatttgtgattgttatttgcagctgaaagttgataagattaagct |
314 |
Q |
| |
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|||| |||||||||||| ||||||||||| |||||| || |||||| ||||||||||||| |
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| T |
4601345 |
atatggtaatgatatgacttgtgattgttctttgcatctcaaagtttataagattaagct |
4601404 |
T |
|
Back To:
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