View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7350_high_13 (Length: 411)
Name: NF7350_high_13
Description: NF7350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7350_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 7 - 395
Target Start/End: Original strand, 3439069 - 3439456
Alignment:
| Q |
7 |
ttctgcattagataaatctagtttaagaatagatcttattaaccatatatgtttatccatgcaagcttcacttaaactcatgtcaatacaaaatcttcca |
106 |
Q |
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||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3439069 |
ttctgcattagataaatctagttcaagaatagagcttattaaccatatatgtttatccatgcaagcttcacttaaactcatgtcaatacaaaatcttcca |
3439168 |
T |
|
| Q |
107 |
ctttctaatgtcgaacacggtatatacagtgtgctatgttctgtttcagcagtcgttaaggtttttcaatgtgttagtcacttggaacattctattttaa |
206 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3439169 |
ctttctaatgtcgaacacggtatatacagtgttctatgttctgtttcagcagtcgttaaggtttttcaatgtgttagtcacttggaacattctattttaa |
3439268 |
T |
|
| Q |
207 |
tagacacgagttccgatttattcacatatatctcagactcagacacgaagaagcttgaataaaccatcgaagcttctcactaatagttgcaagttagcaa |
306 |
Q |
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| T |
3439269 |
tagacacgagttccgatttattcacatatatctcaaactcagacacgaagaagcttgaataaa-catcgaagcttctcactaatagttgcaagttagcaa |
3439367 |
T |
|
| Q |
307 |
ctagttggttgaagagttccaagttctttaacaaggaagtcactggtgagagattaaatgctaataacaggctagacaagtgtcaacct |
395 |
Q |
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| T |
3439368 |
ctagttggttgaagagttccaagttctttaacaaggaagttactggggagagattaaatgctaataacaagcgagacaagtgtcaacct |
3439456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 8 - 318
Target Start/End: Original strand, 1477028 - 1477337
Alignment:
| Q |
8 |
tctgcattagataaatctagtttaagaatagatcttattaaccatatatgtttatccatgcaagcttcacttaaactcatgtcaatacaa------aatc |
101 |
Q |
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| T |
1477028 |
tctgcattagatgagtctagttcaagattacagcttcttaaccaaagatgtttatccatgcaagcttcacttaaatccatctctatgcaattgcaaagta |
1477127 |
T |
|
| Q |
102 |
ttccactttctaatgtcgaacacggtatatacagtgtgctatgttctgtttcagcagtcgttaaggtttttcaatgtgttagtcacttggaacattctat |
201 |
Q |
| |
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|| || ||||| |||| ||||| |||||| |||| || |||||||||||||||||||| | || |||||||||||||||| ||| |||||||||||| | |
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| T |
1477128 |
tttcattttctgatgttgaacatggtatagacagcgttctatgttctgtttcagcagttctcaaagtttttcaatgtgttactcaattggaacattctct |
1477227 |
T |
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| Q |
202 |
tttaatagacacgagttccgatttattcacatatatctcagactcagacacgaagaagcttgaataaaccatcgaagcttctcactaatagttgcaagtt |
301 |
Q |
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| T |
1477228 |
ttcgatagatgcgagttttgatttactcacatatgtctc-----ca-acacaaagaagcttgaa-gaatcattgaagcttctcacagctaattgcaagtt |
1477320 |
T |
|
| Q |
302 |
agcaactagttggttga |
318 |
Q |
| |
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|||||| |||||||||| |
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| T |
1477321 |
agcaaccagttggttga |
1477337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 122; Significance: 2e-62; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 7 - 323
Target Start/End: Original strand, 18288049 - 18288358
Alignment:
| Q |
7 |
ttctgcattagataaatctagtttaagaatagatcttattaaccatatatgtttatccatgcaagcttcacttaaactcatgtcaatacaaaatcttcca |
106 |
Q |
| |
|
||||||||||||| | ||||||| |||| |||| ||| ||||||| ||||||||||||||||||||||||||||| ||| |||| ||||||||||| | |
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| T |
18288049 |
ttctgcattagatgagtctagttcaagattagagcttcttaaccaacgatgtttatccatgcaagcttcacttaaacccatctcaaaacaaaatcttcta |
18288148 |
T |
|
| Q |
107 |
ctttctaatgtcgaacacggtatatacagtgtgctatgttctgtttcagcagtcgttaaggtttttcaatgtgttagtcacttggaacattctattttaa |
206 |
Q |
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|||||||||| |||||||||||| ||||||| |||||||||||||||||| || | |||||||||||||||||| |||||||||| |||||| ||| | |
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| T |
18288149 |
ttttctaatgttgaacacggtatagacagtgttctatgttctgtttcagcaatcctcaaggtttttcaatgtgttggtcacttggagcattctctttcga |
18288248 |
T |
|
| Q |
207 |
tagacacgagttccgatttattcacatatatctcagactcagacacgaagaagcttgaataaaccatcgaagcttctcactaatagttgcaagttagcaa |
306 |
Q |
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| ||| | | ||| ||| | ||||||||| | |||| |||| |||||||||||| || ||| || | |||||||||||| |||||||||||||| |
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| T |
18288249 |
ttgacgcaaattctgatcttttcacatat------gtctcaaacacaaagaagcttgaa-gaagcattgacgtttctcactaataattgcaagttagcaa |
18288341 |
T |
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| Q |
307 |
ctagttggttgaagagt |
323 |
Q |
| |
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||||||||||||||||| |
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| T |
18288342 |
ctagttggttgaagagt |
18288358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 357 - 392
Target Start/End: Original strand, 18288662 - 18288697
Alignment:
| Q |
357 |
agattaaatgctaataacaggctagacaagtgtcaa |
392 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||| |
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| T |
18288662 |
agattaaatgctaataacaggctaaacaagtgtcaa |
18288697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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