View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7350_high_16 (Length: 398)
Name: NF7350_high_16
Description: NF7350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7350_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 105 - 382
Target Start/End: Complemental strand, 38038528 - 38038228
Alignment:
| Q |
105 |
aacaacaagatttcgagtcacataagaaaacataatactactac---cagggaaaggggacacagcaagaaactgattttccctaagcaaaacctaaaca |
201 |
Q |
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| T |
38038528 |
aacaacaagatatcgagtcacataagaaaacatactactactactaccagggaaaggggacacagcaagaaagtgattttccctaagcaaaacctaaaca |
38038429 |
T |
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| Q |
202 |
aacaaacaag--------------------attattacatttaagcagcgttctaaatgcgagtgtcccaaagtgattcttgctgaactttaccactctt |
281 |
Q |
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| T |
38038428 |
aacaaacaagtcagaagaagctacaacaagattattacatttaagcagcgttctaaatgcgagtgtcccaaagtgattcttgctgaactttaccactctt |
38038329 |
T |
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| Q |
282 |
caagagttccgcgatttcctctggagggttcaaaccaagcttcacagcacgctccaagcgtgccagcctcgtcatccccatacaaggcccatacttgatg |
381 |
Q |
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| T |
38038328 |
caagagttccgcgatttcctccggagggttcaaaccaagcttcacagcacgctccaagcgtgccagcctcgtcatccccatacaaggcccatacttcatg |
38038229 |
T |
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| Q |
382 |
t |
382 |
Q |
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| T |
38038228 |
t |
38038228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 38038574 - 38038530
Alignment:
| Q |
21 |
catgtatcaattgcacaattaacagcataagaacagaacagaaca |
65 |
Q |
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| T |
38038574 |
catgtatcaattgcacaattaacagcataagaacagaacagaaca |
38038530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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