View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7350_high_3 (Length: 587)
Name: NF7350_high_3
Description: NF7350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7350_high_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 13 - 571
Target Start/End: Original strand, 5811418 - 5811960
Alignment:
| Q |
13 |
gaacctgtgagacacttccaaactgactgaaatactcttccagttcctcctccctgcaacataataacaataaaatgataaaaccaacacatgattaata |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5811418 |
gaacctgtgagacacttccaaactgactgaaatactcttccagttcttcctccctgcaacataataacaataaaatgataaaaccaacacatgattaata |
5811517 |
T |
|
| Q |
113 |
tattaagatcaattgaaatgacaaaatcattgaaagatattagtaagataaaaaattaactatcagaagacatatttattcagtagaaaaataataaatg |
212 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
5811518 |
tattaagat---ttgaaatgacaaaatcattgaaagatattagtaagataaaaaattaactgtcggaagacatattcattcagtagaaaaataataaatg |
5811614 |
T |
|
| Q |
213 |
gaaaagcaggaaaaacactatgaaagtacgtggtcgtgtatggcagattacgtacaaacagtcgacacgactcaggaacttatttcttaacttctggatt |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
5811615 |
gaaaagcaggaaaaacactatgaaagtacgtggtcgtgtatggcagattacgtacaaacagtcgacacgactcaggaacttctttcttaacttctggatt |
5811714 |
T |
|
| Q |
313 |
tgataatttctcctcttcctcggttgcagtcccttgagacttatcattggcaacatcctctccgaaagtatcttcttggccctctagatctaactcttgg |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
5811715 |
tgataatttctcctcttcctcggttgcagtcccttgagacttatcattggcaacatcctctccgaaaatatcttcttggccctctagatctaactcttgg |
5811814 |
T |
|
| Q |
413 |
gcaccacttcctgggtttctttcggaagggttattaccataattttcttcacattcactagctgggctacggttatctttgtcatcatcgacagcaaatt |
512 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
5811815 |
gcaccac-------------ttcggaagggttattaccacaattttcttcacattcactagctgggctacggttatctttgtcatcatggacagcaaatt |
5811901 |
T |
|
| Q |
513 |
ctgaatcactggtgacattgtcatttccatcatcactgctttcagaatcggaccaatct |
571 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5811902 |
ctgaatcactcgtgacattgtcatttccatcatcactgctttcagaatcggaccaatct |
5811960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 117; Significance: 3e-59; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 239 - 567
Target Start/End: Original strand, 37764393 - 37764721
Alignment:
| Q |
239 |
tacgtggtcgtgtatggcagattacgtacaaacagtcgacacgactcaggaacttatttcttaacttctggatttgataatttctcctcttcctcggttg |
338 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||||||||||| ||||| |||| ||||||| |||||||||||||||||| | |||||||||| |||| |
|
|
| T |
37764393 |
tacgtggtcgaatatggcagattacggacaaacagtcgacacggctcagaaactcctttcttatcttctggatttgataattgcccctcttcctcagttg |
37764492 |
T |
|
| Q |
339 |
cagtcccttgagacttatcattggcaacatcctctccgaaagtatcttcttggccctctagatctaactcttgggcaccacttcctgggtttctttcgga |
438 |
Q |
| |
|
| || ||||||||||||||||||| ||||||| ||| | ||||| ||||||| | ||||||||||||||||| |||||||||| ||| ||||||| | |
|
|
| T |
37764493 |
aattcacttgagacttatcattggctacatcctttccaacagtattttcttggtcttctagatctaactcttgagcaccacttcttggtgttctttcaaa |
37764592 |
T |
|
| Q |
439 |
agggttattaccataattttcttcacattcactagctgggctacggttatctttgtcatcatcgacagcaaattctgaatcactggtgacattgtcattt |
538 |
Q |
| |
|
||||||||||||| |||||||| | |||| |||| | ||| | ||||||||||||||||| ||| | | | ||||||||| || ||| | ||| |
|
|
| T |
37764593 |
agggttattaccacgattttctttatgttcagtagcatgactatgtttatctttgtcatcatcatcagaagacgccgaatcactgttgtcatcgctattg |
37764692 |
T |
|
| Q |
539 |
ccatcatcactgctttcagaatcggacca |
567 |
Q |
| |
|
|||||||||||||||||||||| ||||| |
|
|
| T |
37764693 |
tcatcatcactgctttcagaatcagacca |
37764721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 234 - 567
Target Start/End: Complemental strand, 38601928 - 38601595
Alignment:
| Q |
234 |
gaaagtacgtggtcgtgtatggcagattacgtacaaacagtcgacacgactcaggaacttatttcttaacttctggatttgataatttctcctcttcctc |
333 |
Q |
| |
|
|||| |||||||||| |||||||||||| | |||||||||||||||| ||||| |||| ||||||| ||||||||||||||||| | |||||||||| |
|
|
| T |
38601928 |
gaaattacgtggtcgaatatggcagattaaggacaaacagtcgacacggctcagaaactcctttcttatattctggatttgataattgcccctcttcctc |
38601829 |
T |
|
| Q |
334 |
ggttgcagtcccttgagacttatcattggcaacatcctctccgaaagtatcttcttggccctctagatctaactcttgggcaccacttcctgggtttctt |
433 |
Q |
| |
|
|||||| || ||||||||||||||||||| ||||||| ||| | ||||| ||||||| | ||||||||||||||||| |||||||||| |||| ||||| |
|
|
| T |
38601828 |
agttgcattcacttgagacttatcattggctacatcctttccaacagtattttcttggtcttctagatctaactcttgagcaccacttcttggggttctt |
38601729 |
T |
|
| Q |
434 |
tcggaagggttattaccataattttcttcacattcactagctgggctacggttatctttgtcatcatcgacagcaaattctgaatcactggtgacattgt |
533 |
Q |
| |
|
|| ||||||||||||| |||||||||| |||| ||| | ||| | |||||||||||||| || ||| | | | ||||||||| || ||| | |
|
|
| T |
38601728 |
tcaacagggttattaccacgattttcttcatgttcagtagtatgactaggtttatctttgtcatcgtcatcagaagacgccgaatcactgttgtcatcgc |
38601629 |
T |
|
| Q |
534 |
catttccatcatcactgctttcagaatcggacca |
567 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||| |
|
|
| T |
38601628 |
cattgtcatcatcactgctttcagaatcagacca |
38601595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 234 - 498
Target Start/End: Original strand, 37743205 - 37743469
Alignment:
| Q |
234 |
gaaagtacgtggtcgtgtatggcagattacgtacaaacagtcgacacgactcaggaacttatttcttaacttctggatttgataatttctcctcttcctc |
333 |
Q |
| |
|
|||| |||||||||| |||||||||||||| |||||||||||||||| ||||| |||| ||||||| |||||||||||||||||| | |||||||||| |
|
|
| T |
37743205 |
gaaattacgtggtcgaatatggcagattacggacaaacagtcgacacggctcagaaactcctttcttatcttctggatttgataattgcccctcttcctc |
37743304 |
T |
|
| Q |
334 |
ggttgcagtcccttgagacttatcattggcaacatcctctccgaaagtatcttcttggccctctagatctaactcttgggcaccacttcctgggtttctt |
433 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||||| ||| | |||| || |||| | ||||||||||||||||| |||||||||| |||| || || |
|
|
| T |
37743305 |
agttgcattcacttgagacttatcattggcaacatcctttccaacggtatttttttggtcttctagatctaactcttgagcaccacttcttggggttgtt |
37743404 |
T |
|
| Q |
434 |
tcggaagggttattaccataattttcttcacattcactagctgggctacggttatctttgtcatc |
498 |
Q |
| |
|
|| ||||||||||||| | |||||||||| |||| |||| | ||| | |||||||||||||| |
|
|
| T |
37743405 |
tcagaagggttattacaacgattttcttcatgttcagtagcatgactatgtttatctttgtcatc |
37743469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 13 - 100
Target Start/End: Complemental strand, 38602141 - 38602054
Alignment:
| Q |
13 |
gaacctgtgagacacttccaaactgactgaaatactcttccagttcctcctccctgcaacataataacaataaaatgataaaaccaac |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||| ||||||||||| |
|
|
| T |
38602141 |
gaacctgtgagacactgccaaactgactgaaatgctcttccagttcctcctcactgcaacagaataacaataaaaatataaaaccaac |
38602054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 16 - 100
Target Start/End: Original strand, 37742995 - 37743079
Alignment:
| Q |
16 |
cctgtgagacacttccaaactgactgaaatactcttccagttcctcctccctgcaacataataacaataaaatgataaaaccaac |
100 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||||||| ||||||||| |||||||| ||||||||||||| ||||||||||| |
|
|
| T |
37742995 |
cctgtgagacactgccaaactgactgaaatgctcttccaattcctcctcactgcaacagaataacaataaaaatataaaaccaac |
37743079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 13 - 100
Target Start/End: Original strand, 37758427 - 37758514
Alignment:
| Q |
13 |
gaacctgtgagacacttccaaactgactgaaatactcttccagttcctcctccctgcaacataataacaataaaatgataaaaccaac |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |||||| ||||||||||| |||||| ||||||||||||| ||||||||||| |
|
|
| T |
37758427 |
gaacctgtgagacactgccaaactgactgaaatgctcttcgagttcctcctcactgcaatggaataacaataaaaatataaaaccaac |
37758514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 13 - 100
Target Start/End: Original strand, 37764175 - 37764262
Alignment:
| Q |
13 |
gaacctgtgagacacttccaaactgactgaaatactcttccagttcctcctccctgcaacataataacaataaaatgataaaaccaac |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |||||| ||||||||||| |||||| ||||||||||||| ||||||||||| |
|
|
| T |
37764175 |
gaacctgtgagacactgccaaactgactgaaatgctcttcgagttcctcctcactgcaatggaataacaataaaaatataaaaccaac |
37764262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University