View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7350_high_41 (Length: 240)
Name: NF7350_high_41
Description: NF7350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7350_high_41 |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 653747 - 653975
Alignment:
| Q |
1 |
ttaaatcgcgtgtgagccaaaggcttagtaagaagatcagcgagttggtcttttgttgacacatgtgagacttgaatcttgccatccagaacttgttcac |
100 |
Q |
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| T |
653747 |
ttaaatcgcgtgtgagccaaaggcttagtaagaagatcagcgagttggtcttttgttgacacatgtgagacttgaatcttgccatccagaacttgttcac |
653846 |
T |
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| Q |
101 |
taacaaaatgatagtccatagatatatgcttcattttggagtgaatgattcgatcggagcagagatatgttgcaccaacgttgtcacatagtagcaatgg |
200 |
Q |
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| T |
653847 |
taacaaaatgatagtccatagatatatgcttcattttggagtgaatgattcgatcggagcagagatatgttgcaccaacgttgtcacatagtagcaatgg |
653946 |
T |
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| Q |
201 |
tggttttgacactggtagacgaagttcat |
229 |
Q |
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| T |
653947 |
tggttttgacactggtagacgaagttcat |
653975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 22 - 209
Target Start/End: Complemental strand, 3020002 - 3019815
Alignment:
| Q |
22 |
ggcttagtaagaagatcagcgagttggtcttttgttgacacatgtgagacttgaatcttgccatccagaacttgttcactaacaaaatgatagtccatag |
121 |
Q |
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| T |
3020002 |
ggcttggtgagaaggtcagcaagttgatccttggtagacacatgagagacttgtagctttccatcacgtacttgttcacgcacaaagtgatagtccaagg |
3019903 |
T |
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| Q |
122 |
atatatgcttcattttggagtgaatgattcgatcggagcagagatatgttgcaccaacgttgtcacatagtagcaatggtggttttga |
209 |
Q |
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| T |
3019902 |
atatgtgtttcattttggagtggagaactggattagagcatagatatgtggcacctacattatcacataagagcaatggtggctttga |
3019815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 209
Target Start/End: Complemental strand, 2662935 - 2662748
Alignment:
| Q |
22 |
ggcttagtaagaagatcagcgagttggtcttttgttgacacatgtgagacttgaatcttgccatccagaacttgttcactaacaaaatgatagtccatag |
121 |
Q |
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| T |
2662935 |
ggcttggtgagaaggtcagcaagttgatccttggtagacacatgagagacttgtagctttccatcacgtacttgttcacgcacaaagtgatagtccaagg |
2662836 |
T |
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| Q |
122 |
atatatgcttcattttggagtgaatgattcgatcggagcagagatatgttgcaccaacgttgtcacatagtagcaatggtggttttga |
209 |
Q |
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| T |
2662835 |
atatgtgtttcattttggagtggagaactggattagagcatagatatatggcacctacattatcacataagagcaatggtggctttga |
2662748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 137
Target Start/End: Original strand, 40094330 - 40094454
Alignment:
| Q |
13 |
tgagccaaaggcttagtaagaagatcagcgagttggtcttttgttgacacatgtgagacttgaatcttgccatccagaacttgttcactaacaaaatgat |
112 |
Q |
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| T |
40094330 |
tgagacaaaggcttggtaaggaggtcagctatctgatcctttgtcgagacatgtgagacttgaagcttaccgtctcgaacctgctcacgaacaaagtgat |
40094429 |
T |
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| Q |
113 |
agtccatagatatatgcttcatttt |
137 |
Q |
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| T |
40094430 |
aatccatggctatatgtttcatttt |
40094454 |
T |
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