View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7350_high_42 (Length: 240)
Name: NF7350_high_42
Description: NF7350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7350_high_42 |
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Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 11 - 220
Target Start/End: Original strand, 14340243 - 14340452
Alignment:
| Q |
11 |
gtgagatgaaaaagaagtgaatggtgaaaaactgaacctatatatgtgatgttatttatagggacagaaccacctctcagaagtggccttccaaggattg |
110 |
Q |
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| T |
14340243 |
gtgacatgaaaaagaagtgaatggtgaaaaactgaacctatatatgtgatgttatttatagggacagaaccacctctcagaagtggccttccaaggattg |
14340342 |
T |
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| Q |
111 |
aagatttctcaaaagccatttacaccattgatattggacaaaatgatattggttatggtctgcagaagccgaactcttcagaggaagaagttaaaaggtc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14340343 |
aagatttctcaaaagccatttacaccattgatattggacaaaatgatattagctatggtctgcagaagccgaactcttcagaggaagaagttaaaaggtc |
14340442 |
T |
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| Q |
211 |
aattcctgat |
220 |
Q |
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|||||||||| |
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| T |
14340443 |
aattcctgat |
14340452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 11 - 220
Target Start/End: Original strand, 3601373 - 3601578
Alignment:
| Q |
11 |
gtgagatgaaaaagaagtgaatggtgaaaaactgaacctatatatgtgatgttatttatagggacagaaccacctctcagaagtggccttccaaggattg |
110 |
Q |
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| T |
3601373 |
gtgacatgaaaaagaagtgaatggtgaaaaactgaacctat----gtgatgtcatttatagggacagaaccacctctcagaagtggcgttccaaggactg |
3601468 |
T |
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| Q |
111 |
aagatttctcaaaagccatttacaccattgatattggacaaaatgatattggttatggtctgcagaagccgaactcttcagaggaagaagttaaaaggtc |
210 |
Q |
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| T |
3601469 |
aagatttctcaaaagccatttacaccattgatattggacaaaatgatattggctatggtctgcagaagccgaactcttcagaggaagaagttagaaggtc |
3601568 |
T |
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| Q |
211 |
aattcctgat |
220 |
Q |
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|||||||||| |
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| T |
3601569 |
aattcctgat |
3601578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 101 - 219
Target Start/End: Original strand, 3568467 - 3568579
Alignment:
| Q |
101 |
ccaaggattgaagatttctcaaaagccatttacaccattgatattggacaaaatgatattggttatggtctgcagaagccgaactcttcagaggaagaag |
200 |
Q |
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||||||| | |||||||||| || ||||||||||| |||||||||| ||||||||||||||| | ||||||||||||| |||||||||||| ||| |
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| T |
3568467 |
ccaaggactaaagatttctctaaggccatttacacaattgatattgcacaaaatgatattggctttggtctgcagaag------tcttcagaggaacaag |
3568560 |
T |
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| Q |
201 |
ttaaaaggtcaattcctga |
219 |
Q |
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| T |
3568561 |
ttagaaggtcaattcctga |
3568579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 64 - 220
Target Start/End: Original strand, 1408690 - 1408840
Alignment:
| Q |
64 |
atttatagggacagaaccacctctcagaagtggccttccaaggattgaagatttctcaaaagccatttacaccattgatattggacaaaatgatattggt |
163 |
Q |
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| T |
1408690 |
atttatagggacagaatcacctttcaaaagtggtcttccaaggaatgaggaattctctaaggccctttacacaattgatattggacaaaatgatcttgcc |
1408789 |
T |
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| Q |
164 |
tatggtctgcagaagccgaactcttcagaggaagaagttaaaaggtcaattcctgat |
220 |
Q |
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|||| | || |||| ||||||||||| ||||||||||||||||||||||| |
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| T |
1408790 |
attggtttaca------gaacacttcagaggaacaagttaaaaggtcaattcctgat |
1408840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 70 - 157
Target Start/End: Original strand, 1416682 - 1416769
Alignment:
| Q |
70 |
agggacagaaccacctctcagaagtggccttccaaggattgaagatttctcaaaagccatttacaccattgatattggacaaaatgat |
157 |
Q |
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| T |
1416682 |
agggacagaaccatctctcaaaagtggtcttccaaggcctgaggatttctctaaggccctttacacaattgatattggacaaaatgat |
1416769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 157
Target Start/End: Original strand, 1411832 - 1411919
Alignment:
| Q |
70 |
agggacagaaccacctctcagaagtggccttccaaggattgaagatttctcaaaagccatttacaccattgatattggacaaaatgat |
157 |
Q |
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| T |
1411832 |
agggacggaaccgcctctcaaaagtggtcttccagggcctgaggacttctctaaggccctttacacaattgatattggacaaaatgat |
1411919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 157
Target Start/End: Original strand, 1421141 - 1421228
Alignment:
| Q |
70 |
agggacagaaccacctctcagaagtggccttccaaggattgaagatttctcaaaagccatttacaccattgatattggacaaaatgat |
157 |
Q |
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| T |
1421141 |
agggacagaaccatctctcaaaagtggtcttccaaggcctgaggacttctgtacggccctttacacaattgatattggactaaatgat |
1421228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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