View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7350_high_50 (Length: 211)
Name: NF7350_high_50
Description: NF7350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7350_high_50 |
 | |
|
| [»] scaffold0090 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0090 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: scaffold0090
Description:
Target: scaffold0090; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 4 - 173
Target Start/End: Original strand, 16134 - 16304
Alignment:
| Q |
4 |
aatattgttagaactctataatgaaacaatgaagtcttacaataataatgcttaatatgaatttaatattaaataagacactaatcacaaa-ccaaaatc |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
16134 |
aatattgttagaactctataatgaaacaatgaagtcttacaataataatgcttaatatgaatttaatattaaataagacactaatcacaaatccaaaatc |
16233 |
T |
|
| Q |
103 |
tctcaagaaatcctacacactgacacttaagtcctacagaaccttcactaaattttaagaactcataggaa |
173 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16234 |
tctcaagaaatcctacacactgacacttaagtcctacagaaccttcactaaattttaagaactcataggaa |
16304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University