View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7350_high_7 (Length: 519)
Name: NF7350_high_7
Description: NF7350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7350_high_7 |
 | |
|
| [»] scaffold0005 (1 HSPs) |
| | |
|
| [»] scaffold0020 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-143; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 20 - 305
Target Start/End: Original strand, 44743366 - 44743651
Alignment:
| Q |
20 |
gttatggggcagcgatgattgcatatgaatatcatatgaagtacttactaaagcaaggtaatagatttctttatttttatggatggacttgggttcgaga |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
44743366 |
gttatggggcagcgatgattgcatatgaatatcatatgaagtacttactaaagtaaggtaatagatttctttattctcatggatggacttgggttcgaga |
44743465 |
T |
|
| Q |
120 |
aactcttaacacctcaggtgaaagttataatatgtttagaatggaaactcatgctgtattgaaacttgaaaagttattagtgagtaagggatggttacac |
219 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44743466 |
aactcttaacaccccaggtgaaagttataatatgtttagaatggaaactcatgctgtattgaaacttgaaaagttattagtgagtaagggatggttacac |
44743565 |
T |
|
| Q |
220 |
ccatcaaatgaaatgacatccttggaggcacttgttatgtttctttgaagttttgcgcatagcgagattaatagaaatattcaaaa |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
44743566 |
ccatcaaatgaaatgacatccttggaggcacttgttatgtttctttggagttgtgcgcatagcgagactaatagaaatattcaaaa |
44743651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 16 - 311
Target Start/End: Original strand, 13090483 - 13090774
Alignment:
| Q |
16 |
atatgttatggggcagcgatgattgcatatgaatatcatatgaagtacttactaaagcaaggtaatagatttctttatttttatggatggacttgggttc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| | |||||||||||||||||| |
|
|
| T |
13090483 |
atatgttatggggcagcgatgattgcatatgaatatcatatgaagtacttgctaaagcaaggtaatcgatttctttattctcatggatggacttgggttc |
13090582 |
T |
|
| Q |
116 |
gagaaactcttaacacctcaggtgaaagttataatatgtttagaatggaaactcatgctgtattgaaacttgaaaagttattagtgagtaagggatggtt |
215 |
Q |
| |
|
|| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
13090583 |
gacaaactcttaacaccccatgtgaaagttataatatgtttagaatggaaactcatgctgtattgaaacttgaaaagttattagtgagtaag----ggtt |
13090678 |
T |
|
| Q |
216 |
acacccatcaaatgaaatgacatccttggaggcacttgttatgtttctttgaagttttgcgcatagcgagattaatagaaatattcaaaataaatt |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
13090679 |
acacccatcaaatgaaatgacatccttggaggcacttgttatgtttctttggagttgtgcgcatagcgagactaatagaaatattcaaaataaatt |
13090774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 70 - 304
Target Start/End: Complemental strand, 4527980 - 4527746
Alignment:
| Q |
70 |
aagcaaggtaatagatttctttatttttatggatggacttgggttcgagaaactcttaacacctcaggtgaaagttataatatgtttagaatggaaactc |
169 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
4527980 |
aagcaaggtaatagatttctttattctcatggatggacttgggttcgagaaattcttaacaccccaggtgaaagttacaatatgtttagaatgaaaactc |
4527881 |
T |
|
| Q |
170 |
atgctgtattgaaacttgaaaagttattagtgagtaagggatggttacacccatcaaatgaaatgacatccttggaggcacttgttatgtttctttgaag |
269 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| || |
|
|
| T |
4527880 |
atgctgtattgaaacttgaaaagttgttagtgagtaagggatggttgcacccatcaaatgaaatgacatccttagaggcacttgttatgtttctttggag |
4527781 |
T |
|
| Q |
270 |
ttttgcgcatagcgagattaatagaaatattcaaa |
304 |
Q |
| |
|
|| |||||||||||||| ||||| ||| ||||||| |
|
|
| T |
4527780 |
ttgtgcgcatagcgagactaataaaaacattcaaa |
4527746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 16 - 225
Target Start/End: Original strand, 15210351 - 15210560
Alignment:
| Q |
16 |
atatgttatggggcagcgatgattgcatatgaatatcatatgaagtacttactaaagcaaggtaatagatttctttatttttatggatggacttgggttc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||| ||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
15210351 |
atatgttatggggcagcgatgattgcatatgactatcacatgaagtacttactgaagcaagataatagatttctttattctcatggatggacttgggttc |
15210450 |
T |
|
| Q |
116 |
gagaaactcttaacacctcaggtgaaagttataatatgtttagaatggaaactcatgctgtattgaaacttgaaaagttattagtgagtaagggatggtt |
215 |
Q |
| |
|
|||||||||||| |||| ||||||||||||| |||||||||| |||||||||||||| |||||| |||||||||||||| |||||||| ||||||||||| |
|
|
| T |
15210451 |
gagaaactcttaccaccccaggtgaaagttacaatatgtttaaaatggaaactcatgttgtattaaaacttgaaaagttgttagtgaggaagggatggtt |
15210550 |
T |
|
| Q |
216 |
acacccatca |
225 |
Q |
| |
|
||||||||| |
|
|
| T |
15210551 |
gcacccatca |
15210560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 43 - 311
Target Start/End: Original strand, 14641933 - 14642201
Alignment:
| Q |
43 |
tatgaatatcatatgaagtacttactaaagcaaggtaatagatttctttatttttatggatggacttgggttcgagaaactcttaacacctcaggtgaaa |
142 |
Q |
| |
|
||||| ||||| |||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
14641933 |
tatgattatcacatgaagtacttaataaagcaaggtaatagatttctttattctcgtggatggacttgggttcgagaaactcttaacactaggggtgaaa |
14642032 |
T |
|
| Q |
143 |
gttataatatgtttagaatggaaactcatgctgtattgaaacttgaaaagttattagtgagtaagggatggttacacccatcaaatgaaatgacatcctt |
242 |
Q |
| |
|
||||||| |||||||| |||||| ||||||| |||||||||||||||| ||||| |||||| | |||||||||| ||||| || ||||||||||| || |
|
|
| T |
14642033 |
gttataacatgtttaggatggaatctcatgccatattgaaacttgaaaatttattggtgagtgaaagatggttacatccatctaaagaaatgacatcatt |
14642132 |
T |
|
| Q |
243 |
ggaggcacttgttatgtttctttgaagttttgcgcatagcgagattaatagaaatattcaaaataaatt |
311 |
Q |
| |
|
|||||||||||||||||| ||||| | || || ||||| || | |||| ||||| |||| |||||||| |
|
|
| T |
14642133 |
ggaggcacttgttatgttcctttggacttgcgcacatagtgaaactaattgaaatgttcagaataaatt |
14642201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 163 - 311
Target Start/End: Original strand, 22590737 - 22590885
Alignment:
| Q |
163 |
gaaactcatgctgtattgaaacttgaaaagttattagtgagtaagggatggttacacccatcaaatgaaatgacatccttggaggcacttgttatgtttc |
262 |
Q |
| |
|
|||| ||||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
22590737 |
gaaattcatgttgtattaaaacttgaaaagttattagtgagtaagggatggttgcacccatcaaacgaaatgacatccttggaggcacttgttatgtttc |
22590836 |
T |
|
| Q |
263 |
tttgaagttttgcgcatagcgagattaatagaaatattcaaaataaatt |
311 |
Q |
| |
|
|||| |||| ||| |||||||||| |||||||||||||||||||||||| |
|
|
| T |
22590837 |
tttggagttgtgcacatagcgagactaatagaaatattcaaaataaatt |
22590885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 22590645 - 22590723
Alignment:
| Q |
16 |
atatgttatggggcagcgatgattgcatatgaatatcatatgaagtacttactaaagcaaggtaatagatttctttatt |
94 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
22590645 |
atatgttatggggcagcgatgattgcatatgactatcacatgaaatacttactaaaataaggtaatagatttctttatt |
22590723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 16 - 311
Target Start/End: Complemental strand, 6578577 - 6578282
Alignment:
| Q |
16 |
atatgttatggggcagcgatgattgcatatgaatatcatatgaagtacttactaaagcaaggtaatagatttctttatttttatggatggacttgggttc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||| | ||||||||| |||||||| |
|
|
| T |
6578577 |
atatgttatggggcagcgatgattgcatatgactatcatatgaagtacttaatgaagcaaggtaatagatttctttattctcatggatggaattgggttc |
6578478 |
T |
|
| Q |
116 |
gagaaactcttaacacctcaggtgaaagttataatatgtttagaatggaaactcatgctgtattgaaacttgaaaagttattagtgagtaagggatggtt |
215 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
6578477 |
gagaaactcttaacaccccaggtgaaagttataatatgtttagaatggaaactcatgttgtattgaaacttgaaaagttattagtcagtaagggatggtt |
6578378 |
T |
|
| Q |
216 |
acacccatcaaatgaaatgacatccttggaggcacttgttatgtttctttgaagttttgcgcatagcgagattaatagaaatattcaaaataaatt |
311 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| |||| |||||||| |||| |||| |||| |||| ||||||||| |||||||||||||| |
|
|
| T |
6578377 |
acacccatcaaatgaaatgacattcttggaggcacttattatatttctttggagttgtgcgtatagtgagactaatagaaacattcaaaataaatt |
6578282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 16 - 178
Target Start/End: Original strand, 38835278 - 38835439
Alignment:
| Q |
16 |
atatgttatggggcagcgatgattgcatatgaatatcatatgaagtacttactaaagcaaggtaatagatttctttatttttatggatggacttgggttc |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||| |
|
|
| T |
38835278 |
atatgttatggggcagcgatgattgcatatgaatatcatataaagtacttactaaagcaaggtaatagatttctttattctcatggatggacttggattc |
38835377 |
T |
|
| Q |
116 |
gagaaactcttaacacctcaggtgaaagttataatatgtttagaatggaaactcatgctgtat |
178 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38835378 |
gagaaactcttaacacc-gagatgaaagttataatatgtttagaatggaaactcatgctgtat |
38835439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 49 - 308
Target Start/End: Complemental strand, 38318106 - 38317847
Alignment:
| Q |
49 |
tatcatatgaagtacttactaaagcaaggtaatagatttctttatttttatggatggacttgggttcgagaaactcttaacacctcaggtgaaagttata |
148 |
Q |
| |
|
|||||||||||||| |||| || |||||||| | |||| |||||| ||| ||||| |||||||||||||| |||||||||| ||||| ||||||||| |
|
|
| T |
38318106 |
tatcatatgaagtatttaccaaggcaaggtagcaaatttatttattcacatgaatggaattgggttcgagaaattcttaacaccccaggtaaaagttata |
38318007 |
T |
|
| Q |
149 |
atatgtttagaatggaaactcatgctgtattgaaacttgaaaagttattagtgagtaagggatggttacacccatcaaatgaaatgacatccttggaggc |
248 |
Q |
| |
|
| |||||||| ||| || || ||| ||| |||||||||||||| |||||||| |||||| |||||||||| ||||| || ||||||||||| |||||||| |
|
|
| T |
38318006 |
acatgtttaggatgaaatctaatgttgtgttgaaacttgaaaaattattagttagtaagagatggttacatccatccaaagaaatgacatcgttggaggc |
38317907 |
T |
|
| Q |
249 |
acttgttatgtttctttgaagttttgcgcatagcgagattaatagaaatattcaaaataa |
308 |
Q |
| |
|
| |||||||||||| |||| ||| ||||| |||| |||| |||| | |||||||| |
|
|
| T |
38317906 |
tttgactatgtttctttggagttgtgcacatagtgagactaatcaaaatgtccaaaataa |
38317847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 166; Significance: 1e-88; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 319 - 500
Target Start/End: Original strand, 37119069 - 37119250
Alignment:
| Q |
319 |
caataattaagatttcagaactgtctttctcaattttgtactcacgtactgccttttttcaagtactacctactttgctaataacatacgaagaaaaaat |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
37119069 |
caataattaagatttcagaactgtctttctcaattttgtactcacgtactgccttttttcaagtactgcctactttgctaataacatacgaagaaaaaat |
37119168 |
T |
|
| Q |
419 |
acaaaatatccgtcttaaatgaccaaaataaacatcaaactttgactcacacacagtcacgccaaacatgctcacaccatac |
500 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
37119169 |
gcaaaaaatccgtcttaaatgaccaaaataaacatcaaactttgactcacacacagtcacgccaaacatggtcacaccatac |
37119250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 16 - 226
Target Start/End: Original strand, 25705689 - 25705901
Alignment:
| Q |
16 |
atatgttatggggcagcgatgattgcatatgaatatcatatgaagtacttact--aaagcaaggtaatagatttctttatttttatggatggacttgggt |
113 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
25705689 |
atatgttatggggcagctatgattgcatatgactatcacatgaagtacttactgaaaagcaaggtaatagatttctttattctcatggatggacttgggt |
25705788 |
T |
|
| Q |
114 |
tcgagaaactcttaacacctcaggtgaaagttataatatgtttagaatggaaactcatgctgtattgaaacttgaaaagttattagtgagtaagggatgg |
213 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
25705789 |
tcgagaaactcttaacaccccaggtgaaagttacaatatgtttagaatggaaactcatgctgtattgaaacttgaaaagttgttagtgaggaagggatgg |
25705888 |
T |
|
| Q |
214 |
ttacacccatcaa |
226 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
25705889 |
ttgcacccatcaa |
25705901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 49 - 311
Target Start/End: Original strand, 3590789 - 3591051
Alignment:
| Q |
49 |
tatcatatgaagtacttactaaagcaaggtaatagatttctttatttttatggatggacttgggttcgagaaactcttaacacctcaggtgaaagttata |
148 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
3590789 |
tatcatatgaagtacttactaaagcaaggtaatagatttctttattcacatggatggaattgggttcgagaaactcttaacactccaggcgaaagttata |
3590888 |
T |
|
| Q |
149 |
atatgtttagaatggaaactcatgctgtattgaaacttgaaaagttattagtgagtaagggatggttacacccatcaaatgaaatgacatccttggaggc |
248 |
Q |
| |
|
| |||||||| |||||| || ||||||| ||||||||||||| |||||||| ||||||||||||||||| ||||| |||||||||||||| ||||| || |
|
|
| T |
3590889 |
acatgtttaggatggaatctaatgctgtgctgaaacttgaaaaattattagttagtaagggatggttacatccatctaatgaaatgacatcgttggaagc |
3590988 |
T |
|
| Q |
249 |
acttgttatgtttctttgaagttttgcgcatagcgagattaatagaaatattcaaaataaatt |
311 |
Q |
| |
|
| |||||||||||| |||| ||| ||||| |||| |||| ||||| | ||||||||||| |
|
|
| T |
3590989 |
tttgactatgtttctttggagttgtgcacatagtgagactaatcgaaatgtccaaaataaatt |
3591051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 49 - 311
Target Start/End: Complemental strand, 9787002 - 9786740
Alignment:
| Q |
49 |
tatcatatgaagtacttactaaagcaaggtaatagatttctttatttttatggatggacttgggttcgagaaactcttaacacctcaggtgaaagttata |
148 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
9787002 |
tatcatatgaagtatttactaaagcaaggtaacagatttctttattcacatggatggaattgggttcgagaaactcttaacactccaggcgaaagttata |
9786903 |
T |
|
| Q |
149 |
atatgtttagaatggaaactcatgctgtattgaaacttgaaaagttattagtgagtaagggatggttacacccatcaaatgaaatgacatccttggaggc |
248 |
Q |
| |
|
| |||||||| |||||| || ||||||| ||||||||||||| |||||||| ||||||||||||||||| ||||| |||||||||||||| |||||||| |
|
|
| T |
9786902 |
acatgtttaggatggaatctaatgctgtgctgaaacttgaaaaattattagttagtaagggatggttacatccatctaatgaaatgacatcgttggaggc |
9786803 |
T |
|
| Q |
249 |
acttgttatgtttctttgaagttttgcgcatagcgagattaatagaaatattcaaaataaatt |
311 |
Q |
| |
|
| |||||||||||| |||| ||| || || |||| |||| ||||| | ||||||||||| |
|
|
| T |
9786802 |
tttgactatgtttctttggagttgtgcacacagtgagactaatcgaaatgtccaaaataaatt |
9786740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 43 - 311
Target Start/End: Complemental strand, 4576068 - 4575800
Alignment:
| Q |
43 |
tatgaatatcatatgaagtacttactaaagcaaggtaatagatttctttatttttatggatggacttgggttcgagaaactcttaacacctcaggtgaaa |
142 |
Q |
| |
|
||||| ||||| |||||||||||| ||||||||||||||||||||||| ||| | |||| ||||||||||||||||||||||||||| ||||||| |
|
|
| T |
4576068 |
tatgattatcacatgaagtacttaataaagcaaggtaatagatttcttgattctcgtggacagacttgggttcgagaaactcttaacactaggggtgaaa |
4575969 |
T |
|
| Q |
143 |
gttataatatgtttagaatggaaactcatgctgtattgaaacttgaaaagttattagtgagtaagggatggttacacccatcaaatgaaatgacatcctt |
242 |
Q |
| |
|
|||||||||||||||| |||||| ||||||| |||||||||||||||| ||||| |||||||| ||||||||||| ||||| || ||||||||||| || |
|
|
| T |
4575968 |
gttataatatgtttaggatggaatctcatgccatattgaaacttgaaaaattattggtgagtaaaggatggttacatccatctaaagaaatgacatcatt |
4575869 |
T |
|
| Q |
243 |
ggaggcacttgttatgtttctttgaagttttgcgcatagcgagattaatagaaatattcaaaataaatt |
311 |
Q |
| |
|
|||| ||||||||||||||||||| | || || ||||| || | |||| ||||| |||| |||||||| |
|
|
| T |
4575868 |
ggagacacttgttatgtttctttggacttgcgcacatagtgaaactaatcgaaatgttcagaataaatt |
4575800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 16 - 177
Target Start/End: Original strand, 36331908 - 36332069
Alignment:
| Q |
16 |
atatgttatggggcagcgatgattgcatatgaatatcatatgaagtacttactaaagcaaggtaatagatttctttatttttatggatggacttgggttc |
115 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
36331908 |
atatgttatgggacagcgatgattgcatatgattatcatatgaagtacttactaaaacaaggtaatagatttttttattttcatggatggacttgggttc |
36332007 |
T |
|
| Q |
116 |
gagaaactcttaacacctcaggtgaaagttataatatgtttagaatggaaactcatgctgta |
177 |
Q |
| |
|
|||||||||||||| | ||||| ||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
36332008 |
gagaaactcttaacttcccaggtaaaagtcataatatgtttagaatggaaattcatgctgta |
36332069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 137; Significance: 3e-71; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 43 - 311
Target Start/End: Original strand, 7231433 - 7231701
Alignment:
| Q |
43 |
tatgaatatcatatgaagtacttactaaagcaaggtaatagatttctttatttttatggatggacttgggttcgagaaactcttaacacctcaggtgaaa |
142 |
Q |
| |
|
||||| ||||| |||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
7231433 |
tatgattatcacatgaagtacttaataaagcaaggtaatagatttctttattctcgtggatggacttgggttcgagaaactcttaacactagaggtgaaa |
7231532 |
T |
|
| Q |
143 |
gttataatatgtttagaatggaaactcatgctgtattgaaacttgaaaagttattagtgagtaagggatggttacacccatcaaatgaaatgacatcctt |
242 |
Q |
| |
|
||||||| |||||||| |||||| ||||||| |||||||||||||||| ||||| |||||||| |||||||||| ||||| || ||||||||||| || |
|
|
| T |
7231533 |
gttataacatgtttaggatggaatctcatgccatattgaaacttgaaaatttattggtgagtaaaagatggttacatccatctaaagaaatgacatcatt |
7231632 |
T |
|
| Q |
243 |
ggaggcacttgttatgtttctttgaagttttgcgcatagcgagattaatagaaatattcaaaataaatt |
311 |
Q |
| |
|
|||||||||||||||||| ||||| | || || ||||| || | |||||||||| |||| |||||||| |
|
|
| T |
7231633 |
ggaggcacttgttatgttcctttggacttgcgcacatagtgaaactaatagaaatgttcagaataaatt |
7231701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 126; Significance: 9e-65; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 154 - 311
Target Start/End: Complemental strand, 26333669 - 26333513
Alignment:
| Q |
154 |
tttagaatggaaactcatgctgtattgaaacttgaaaagttattagtgagtaagggatggttacacccatcaaatgaaatgacatccttggaggcacttg |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
26333669 |
tttagaatggaaactcatgctgtattgaaacttgaaaagttattagtgagtaagggatggttacacccatcaaatg-aatgacatccttggaggcacttg |
26333571 |
T |
|
| Q |
254 |
ttatgtttctttgaagttttgcgcatagcgagattaatagaaatattcaaaataaatt |
311 |
Q |
| |
|
| ||||||||||| ||| |||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
26333570 |
taatgtttctttggggttgtgcgcatagcgagactaatagaaacattcaaaataaatt |
26333513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 125; Significance: 4e-64; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 43 - 311
Target Start/End: Complemental strand, 175359 - 175091
Alignment:
| Q |
43 |
tatgaatatcatatgaagtacttactaaagcaaggtaatagatttctttatttttatggatggacttgggttcgagaaactcttaacacctcaggtgaaa |
142 |
Q |
| |
|
||||| ||||| |||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
175359 |
tatgattatcacatgaagtacttaataaagcaaggtaatagatttctttattctcgtggatggacttgggttcgagaaactcttaacactaggggtgaaa |
175260 |
T |
|
| Q |
143 |
gttataatatgtttagaatggaaactcatgctgtattgaaacttgaaaagttattagtgagtaagggatggttacacccatcaaatgaaatgacatcctt |
242 |
Q |
| |
|
||||||| |||||||| |||||| ||||||| |||||||||||||||| ||||| |||||| | |||||||||| ||||| || ||||||||||| || |
|
|
| T |
175259 |
gttataacatgtttaggatggaatctcatgccatattgaaacttgaaaatttattggtgagtgaaagatggttacatccatctaaagaaatgacatcatt |
175160 |
T |
|
| Q |
243 |
ggaggcacttgttatgtttctttgaagttttgcgcatagcgagattaatagaaatattcaaaataaatt |
311 |
Q |
| |
|
|||||||||||||||||| ||||| | || || ||||| || | |||| ||||| |||| |||||||| |
|
|
| T |
175159 |
ggaggcacttgttatgttcctttggacttgcgcacatagtgaaactaattgaaatgttcagaataaatt |
175091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0020 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: scaffold0020
Description:
Target: scaffold0020; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 43 - 311
Target Start/End: Original strand, 131859 - 132127
Alignment:
| Q |
43 |
tatgaatatcatatgaagtacttactaaagcaaggtaatagatttctttatttttatggatggacttgggttcgagaaactcttaacacctcaggtgaaa |
142 |
Q |
| |
|
||||| ||||| |||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
131859 |
tatgattatcacatgaagtacttaataaagcaaggtaatagatttctttattctagtggatggacttgggttcgagaaactcttaacactaggggtgaaa |
131958 |
T |
|
| Q |
143 |
gttataatatgtttagaatggaaactcatgctgtattgaaacttgaaaagttattagtgagtaagggatggttacacccatcaaatgaaatgacatcctt |
242 |
Q |
| |
|
||||||| |||||||| |||||| ||| ||| |||||||||||||||| || || |||||||| ||||||||||| ||||| || ||||||||||| || |
|
|
| T |
131959 |
gttataacatgtttaggatggaatctcgtgccatattgaaacttgaaaattttttggtgagtaaaggatggttacatccatctaaagaaatgacatcatt |
132058 |
T |
|
| Q |
243 |
ggaggcacttgttatgtttctttgaagttttgcgcatagcgagattaatagaaatattcaaaataaatt |
311 |
Q |
| |
|
||||| | |||||||||| ||||| | || || ||||| || | |||| ||||| |||| |||||||| |
|
|
| T |
132059 |
ggaggtaattgttatgttcctttggacttgcgcacatagtgaaactaatcgaaatgttcagaataaatt |
132127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 55 - 266
Target Start/End: Original strand, 29565238 - 29565449
Alignment:
| Q |
55 |
atgaagtacttactaaagcaaggtaatagatttctttatttttatggatggacttgggttcgagaaactcttaacacctcaggtgaaagttataatatgt |
154 |
Q |
| |
|
|||||||||||| ||||| || |||||||||||||||||| | ||||||||||||||||||||||||||| ||||| | ||||||||||||| |||| |
|
|
| T |
29565238 |
atgaagtacttaataaagaaatgtaatagatttctttattctcgtggatggacttgggttcgagaaactctaaacactagaagtgaaagttataacatgt |
29565337 |
T |
|
| Q |
155 |
ttagaatggaaactcatgctgtattgaaacttgaaaagttattagtgagtaagggatggttacacccatcaaatgaaatgacatccttggaggcacttgt |
254 |
Q |
| |
|
|||| |||||| ||||||| |||||||||||||||| ||||| |||| ||| ||| |||||| ||||| || ||||||||||| |||||||||||||| |
|
|
| T |
29565338 |
ttaggatggaatctcatgccatattgaaacttgaaaatttattggtgaataaaagatagttacatccatctaaagaaatgacatcattggaggcacttgt |
29565437 |
T |
|
| Q |
255 |
tatgtttctttg |
266 |
Q |
| |
|
|||||| ||||| |
|
|
| T |
29565438 |
tatgttcctttg |
29565449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University