View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7350_high_8 (Length: 432)
Name: NF7350_high_8
Description: NF7350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7350_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 20 - 420
Target Start/End: Original strand, 308425 - 308825
Alignment:
| Q |
20 |
tttctcttgacgcaaaacctgactctcccagtttttatccttgtagggtgctttgtcatctgcaaattgcttctcaggtctgtccaaatggtatggattg |
119 |
Q |
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| T |
308425 |
tttctcttgacgcaaaacctgactctcccagtttttatccttgtagggtgctttgtcatctgcaaattgcttctcaggtctgtccaaatggtatggattg |
308524 |
T |
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| Q |
120 |
ctgcttctttcctccttcctttctgtcctttctggacgatggttaaactggccttttgcagctagattaacttctcctgaatccaccggagccttcttct |
219 |
Q |
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| T |
308525 |
ctgcttctttcctccttcctttctgtcctttctggacgatggttaaactggccttttgcagctagattaacgtctcctgaatccaccggagccttcttct |
308624 |
T |
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| Q |
220 |
ccttgaatgcaggtcttttcctcgaggtaggaggttgatcctcttttctttcagaaaaaaccaccttgtctgtgagatgtataattgtcaagtttagctt |
319 |
Q |
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| T |
308625 |
ccttgaatgcaggtcttttcctcgaggtaggaggttgatcctcttttctttcagaaaaaaccaccttgtctgtgagatgtataattgtcaagtttagctt |
308724 |
T |
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| Q |
320 |
gtgatttctcatctcttttctctcttccttctgtgaatgcaggtatttcccttcagctttatgtttggaaagttcgtaatgatcatttgatttgatgtcc |
419 |
Q |
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| T |
308725 |
gtgatttctcatctcttttctctcttccttctgtgaatgcaagtatttcccttcagctttatgtttgggaagttcgtaatgatcatttgatttgttgtcc |
308824 |
T |
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| Q |
420 |
a |
420 |
Q |
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| T |
308825 |
a |
308825 |
T |
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Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 73 - 155
Target Start/End: Complemental strand, 48117101 - 48117019
Alignment:
| Q |
73 |
tgtcatctgcaaattgcttctcaggtctgtccaaatggtatggattgctgcttctttcctccttcctttctgtcctttctgga |
155 |
Q |
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| T |
48117101 |
tgtcctctgcaattcgcttctcaggtctatctagatggttagggttgctgcttctttcctccttcctttcattcctttctgga |
48117019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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