View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7350_low_10 (Length: 553)
Name: NF7350_low_10
Description: NF7350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7350_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 467; Significance: 0; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 1 - 550
Target Start/End: Complemental strand, 29643341 - 29642794
Alignment:
| Q |
1 |
tatcttatataaaatgagttctaaaactattttttcctttcatgccaccatctaccaccattaatccagcaataactcttgatgtgcttgcagttgggtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||| |
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| T |
29643341 |
tatcttatataaaatgagttctaaaactattttttcctttcatgccaccatctaccac-accattccagcaataactcttgatgtgcttgcagttgggtc |
29643243 |
T |
|
| Q |
101 |
gtagacctataattcaaaaaggatccgtattatacaggagagtgatgcaccgaaatacaaaaatttaaaacaaaacacacggnnnnnnnnntgaatacaa |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
29643242 |
gtagacctataattcaaaaaggatccgtattatacaggagagtgatgcaccgaaatacaaaaatttaaaacaaaacacacg-aaaaaaaaatgaatacaa |
29643144 |
T |
|
| Q |
201 |
tacaaagcccaaatgtgacaaaggaaaatgtgtgcagaaacatactttcaacaactttgaacttcaatacaatacaaaaacgctcaccatctgcaaattg |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29643143 |
tacaaagcccaaatgtgacaaaggaaaatgtgtgcagaaacatactttcaacaactttgaacttcaatacaatacaaaaacgctcaccatctgcaaattt |
29643044 |
T |
|
| Q |
301 |
tgaagcagatgcaattaatataagtttgaagaaataagataattctgatttttccttttctaatcttagtaatgatctgtagataataaaacttttcaag |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
29643043 |
tgaagcagatgcaattaatataagtttgaagaaataaaataattctgatttttccttttctaatcttagtaatgatctgttgataataaaacttttcaag |
29642944 |
T |
|
| Q |
401 |
tattataccaaaaacaatctttccaagcctaaatttacttgtcacttcgcattgacttgtttcctgctttaacctttcagtctattactaagagaaattt |
500 |
Q |
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| |||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29642943 |
tcttataccaaaaacaatctttccaagcctaattttacttgtcacatcgcattgacttgtttcctgctttaacctttcagtctattactaagagaaattt |
29642844 |
T |
|
| Q |
501 |
aatttgcctttggaagaatcatcttccagttaccaaacacttaggagtag |
550 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29642843 |
aatttgcctttggaagaatcatcttccagttaccaaacacttaggagtag |
29642794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 203 - 401
Target Start/End: Complemental strand, 29648340 - 29648143
Alignment:
| Q |
203 |
caaagcccaaatgtgacaaaggaaaatgtgtgcagaaacatactttcaacaactttgaacttcaatacaatacaaaaacgctcaccatctgcaaattgtg |
302 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| || |
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|
| T |
29648340 |
caaaacccaaatgtgacaaat-aaaatgtgtgcagaaacatactttcaacaaatttgaactttaatacaatacaaaaacgctcaccatctgcaaattttg |
29648242 |
T |
|
| Q |
303 |
aagcagatgcaattaatataagtttgaagaaataagataattctgatttttccttttctaatcttagtaatgatctgtagataataaaacttttcaagt |
401 |
Q |
| |
|
||||| ||||| |||||||||| |||||||||||| ||||||||| ||||||||||||| |||| ||||||||||| ||||||||| |||| ||||| |
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|
| T |
29648241 |
aagcaaatgcatttaatataaggttgaagaaataaaataattctggtttttccttttctcatctcagtaatgatctagtgataataaatctttccaagt |
29648143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 29648565 - 29648398
Alignment:
| Q |
1 |
tatcttatataaaatgagttctaaaactattttttcctttcatgccaccatctaccaccattaatccagcaataactcttgatgtgcttgcagttgggtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
29648565 |
tatcttatataaaatgagttctaaaactatttcttcctttcatgccaccatctaccacca-----------ataactctcgatgtgcttgcagttgggtc |
29648477 |
T |
|
| Q |
101 |
gtagacctataattcaaaaaggatccgtattatacaggagagtgatgcaccgaaatacaaaaatttaaaacaaaacaca |
179 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||| |
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|
| T |
29648476 |
gtagacctataattcaaaaaggatccgtattatacaagagagtgatacaccgaaatacaaaaggttaaaacaaaacaca |
29648398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 203 - 358
Target Start/End: Original strand, 29820530 - 29820684
Alignment:
| Q |
203 |
caaagcccaaatgtgacaaaggaaaatgtgtgcagaaacatactttcaacaactttgaacttcaatacaatacaaaaacgctcaccatctgcaaattgtg |
302 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
29820530 |
caaaacccaaatgtgacaaat-aaaatgtgtgcagaaacatactttcaacaactttgaacttcaatacaatacaaaaacgctcaccatctgcaaattttg |
29820628 |
T |
|
| Q |
303 |
aagcagatgcaattaatataagtttgaagaaataagataattctgatttttccttt |
358 |
Q |
| |
|
||||| ||| ||||||||||||||||||||||||| ||| ||| |||||||||| |
|
|
| T |
29820629 |
aagcaaatggaattaatataagtttgaagaaataaagtaactctagtttttccttt |
29820684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 29820305 - 29820472
Alignment:
| Q |
1 |
tatcttatataaaatgagttctaaaactattttttcctttcatgccaccatctaccaccattaatccagcaataactcttgatgtgcttgcagttgggtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||| |
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|
| T |
29820305 |
tatcttatataaaatgagttctaaaactatttcttcctttcatgccaccatctaccaccagtaa-----------ctcttgatgtgcttgcatttgggtc |
29820393 |
T |
|
| Q |
101 |
gtagacctataattcaaaaaggatccgtattatacaggagagtgatgcaccgaaatacaaaaatttaaaacaaaacaca |
179 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||| |
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|
| T |
29820394 |
gtagacctataactcaaaaaggatccgtattatacaagagagtgatacaccgaaatacaaaaggttaaaacaaaacaca |
29820472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 250 - 434
Target Start/End: Original strand, 29596920 - 29597104
Alignment:
| Q |
250 |
aacaactttgaacttcaatacaatacaaaaacgctcaccatctgcaaattgtgaagcagatgcaattaatataagtttgaagaaataagataattctgat |
349 |
Q |
| |
|
||||| ||| ||||||||||| |||||||| |||||||||| |||||||| ||||||| || ||||||||||||||||||||||||| | || |||| |
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|
| T |
29596920 |
aacaaatttaaacttcaatacgatacaaaa-cgctcaccatttgcaaattttgaagcaaattgaattaatataagtttgaagaaataaaaaaactctggc |
29597018 |
T |
|
| Q |
350 |
ttttccttttctaatcttagtaatgatctgtagataataaaacttttcaagtattataccaaaaac-aatctttccaagcctaaat |
434 |
Q |
| |
|
|||||||||||| |||| ||||||||| | ||||||||||| ||||| |||| || || ||||||| ||| |||||||| |||||| |
|
|
| T |
29597019 |
ttttccttttctcatctcagtaatgatttatagataataaatctttttaagtcttctatcaaaaacaaatatttccaagtctaaat |
29597104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 292 - 516
Target Start/End: Original strand, 29593634 - 29593859
Alignment:
| Q |
292 |
tgcaaattgtgaagcagatgcaattaatataagtttgaagaaataagataattctgatttttccttttctaatcttagtaa-tgatctgtagataataaa |
390 |
Q |
| |
|
|||||||| ||||||| || ||||||||||||||||||||||||| | || ||| ||||||||||| | |||| ||||| |||||| ||||||||||| |
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|
| T |
29593634 |
tgcaaattttgaagcaaattgaattaatataagtttgaagaaataaaacaactcttgtttttccttttgtcatctcagtaattgatctatagataataaa |
29593733 |
T |
|
| Q |
391 |
acttttcaagtattataccaaaaac-aatctttccaagcctaaatttacttgtca-cttcgcattgacttgtttcctgctttaacctttcagtctattac |
488 |
Q |
| |
|
||| |||| || |||||||||| || |||||||| |||||| ||||||||| ||| ||||||| |||||||| |||||||||||||||||| | |
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|
| T |
29593734 |
tatttctaagtcttctaccaaaaacaaagatttccaagtctaaatgtacttgtcattttcccattgacatgtttcctcctttaacctttcagtcta--at |
29593831 |
T |
|
| Q |
489 |
taagagaaatttaatttgcctttggaag |
516 |
Q |
| |
|
||||||||||| |||||| |||||||| |
|
|
| T |
29593832 |
taagagaaattgaatttgattttggaag |
29593859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 416 - 505
Target Start/End: Complemental strand, 29648155 - 29648066
Alignment:
| Q |
416 |
aatctttccaagcctaaatttacttgtcacttcgcattgacttgtttcctgctttaacctttcagtctattactaagagaaatttaattt |
505 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||| |
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|
| T |
29648155 |
aatctttccaagtctaaatttacatgtcacttcccattgacatgtttcctgatttaacctttcagtctattactaagagaaattgaattt |
29648066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 70 - 139
Target Start/End: Original strand, 29596794 - 29596863
Alignment:
| Q |
70 |
caataactcttgatgtgcttgcagttgggttgtagacctataattcaaaaaggatccgtattatacagga |
139 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||| | ||||||||||||| |||| ||| ||||||||||| |
|
|
| T |
29596794 |
caataactcatgatgtgcttgcaattgggttgttggcctataattcaaagaggagccggattatacagga |
29596863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 458 - 533
Target Start/End: Original strand, 29820695 - 29820767
Alignment:
| Q |
458 |
tgtttcctgctttaacctttcagtctattactaagagaaatttaatttgcctttggaagaatcatcttccagttac |
533 |
Q |
| |
|
|||||||| ||||||||||||||||||| | |||||||||||||| | ||||||||||||||||||||||||| |
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|
| T |
29820695 |
tgtttcctactttaacctttcagtctataattaagagaaatttaa---ccttttggaagaatcatcttccagttac |
29820767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 29593313 - 29593455
Alignment:
| Q |
1 |
tatcttatataaaatgagttctaaaactattttttcctttcatgccaccatctaccaccattaatccagcaataactcttgatgtgcttgcagttgggt- |
99 |
Q |
| |
|
||||||||||||||||||| ||| ||||||| |||||||| | | | ||| ||||||| | ||| ||||||||||||||||||||||| || || |
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|
| T |
29593313 |
tatcttatataaaatgagtaataatactatttcttcctttcttcctatcatg--ccaccatcta-ccatcaataactcttgatgtgcttgcatttaggcc |
29593409 |
T |
|
| Q |
100 |
tgtagacctataattcaaaaaggatccgtattatacaggagagtga |
145 |
Q |
| |
|
||| ||||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
29593410 |
tgtctgcctataattcaaaaaggatccatgttatacaggagagtga |
29593455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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