View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7350_low_14 (Length: 423)
Name: NF7350_low_14
Description: NF7350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7350_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 348; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 18 - 409
Target Start/End: Complemental strand, 1755818 - 1755427
Alignment:
| Q |
18 |
catcaggccacaaagtgacaggaaaatatgtgtgaagcaaagctggcgcaggccaaagggtattgattcacgagttaggagaaaattcaaagtagttact |
117 |
Q |
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| T |
1755818 |
catcaggccacaaagtgacaggaaaatatgtgtgaagcaaagctggcgcaggccaaagggtattgattcacaagttaggagaaaattcaagggagttact |
1755719 |
T |
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| Q |
118 |
ttgatgcccaacattggatacggctcagacaagaagacccgccactatttgcctaatggattcaagaagtttgtcgtgcacaatgtccatgacctgtaac |
217 |
Q |
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| T |
1755718 |
ttgatgcccaatattggatacggctcagacaagaagacccgccactatttgcctaatggattcaagaagtttgtcgtgcacaatgtccaggacctggaac |
1755619 |
T |
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| Q |
218 |
ttttgatgatgcacagcaggacatactgtgctgagatcgcacacaatgtgtcaaccaagaaaaggaaggacattgttgaacgtgcagcacagttggatgt |
317 |
Q |
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| T |
1755618 |
ctttgatgatgcacaacaggacatactgtgctgagatcgcacacaatgtgtcaaccaggaaaaggaaggacattgttgaacgtgcagcacagttggatgt |
1755519 |
T |
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| Q |
318 |
tgttgtcaccaacaagctggccaggctacgcagtcaagaagacgagtggttgcttttgcaatgtcaaatcatttttgcttttgttgtttatg |
409 |
Q |
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| T |
1755518 |
tgttgtcaccaacaagttggccaggctacgcagtcaagaagacgagtgattgcttttgcaatgtcaaatcatttttgcttttgttgtttatg |
1755427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 234 - 409
Target Start/End: Original strand, 18705515 - 18705690
Alignment:
| Q |
234 |
caggacatactgtgctgagatcgcacacaatgtgtcaaccaagaaaaggaaggacattgttgaacgtgcagcacagttggatgttgttgtcaccaacaag |
333 |
Q |
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| T |
18705515 |
caggacatactgtgctgagatcgcacacaatgtgtcaaccaggaaaaggaaggacattgttgaacgtgcagcacagttggatgttgttgtcaccaacaag |
18705614 |
T |
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| Q |
334 |
ctggccaggctacgcagtcaagaagacgagtggttgcttttgcaatgtcaaatcatttttgcttttgttgtttatg |
409 |
Q |
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| T |
18705615 |
ctggccaggctacgcagtcaagaagacgagtgattgcttttgcaatgtcaaatcatttttgcttttgttgtttatg |
18705690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 53 - 237
Target Start/End: Original strand, 18705247 - 18705431
Alignment:
| Q |
53 |
agcaaagctggcgcaggccaaagggtattgattcacgagttaggagaaaattcaaagtagttactttgatgcccaacattggatacggctcagacaagaa |
152 |
Q |
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| T |
18705247 |
agcaaagctggcgcaggccaaagggtattgattcacgagttaggagaaaattcaaaggagttactttgatgcccaatattggatacggctcagacaagaa |
18705346 |
T |
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| Q |
153 |
gacccgccactatttgcctaatggattcaagaagtttgtcgtgcacaatgtccatgacctgtaacttttgatgatgcacagcagg |
237 |
Q |
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| T |
18705347 |
gacccgccactatttgcctaatggattcaagaagtttgtcgtgcacaatgtccaagacctggaacttttgatgatgcacaacagg |
18705431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 18704610 - 18704646
Alignment:
| Q |
18 |
catcaggccacaaagtgacaggaaaatatgtgtgaag |
54 |
Q |
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| T |
18704610 |
catcaggccacaaagtgacaggaaaatatgtgtgaag |
18704646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 60 - 266
Target Start/End: Original strand, 35545581 - 35545787
Alignment:
| Q |
60 |
ctggcgcaggccaaagggtattgattcacgagttaggagaaaattcaaagtagttactttgatgcccaacattggatacggctcagacaagaagacccgc |
159 |
Q |
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||||||||| |||||||||||||||||||| || |||||||| || || | | |||||||||||| || ||||| || || ||||| |||||||| | |
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| T |
35545581 |
ctggcgcagaccaaagggtattgattcacgtgtgaggagaaagtttaagggatgtactttgatgccaaatattgggtatggatcagataagaagactagg |
35545680 |
T |
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| Q |
160 |
cactatttgcctaatggattcaagaagtttgtcgtgcacaatgtccatgacctgtaacttttgatgatgcacagcaggacatactgtgctgagatcgcac |
259 |
Q |
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| T |
35545681 |
cattatctaccaaatggttttaagaaatttgttgtttgcaatgttaatgatttggagcttttaatgatgcacaataggacttattgtgctgagattgcac |
35545780 |
T |
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| Q |
260 |
acaatgt |
266 |
Q |
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||||||| |
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| T |
35545781 |
acaatgt |
35545787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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