View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7350_low_15 (Length: 422)
Name: NF7350_low_15
Description: NF7350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7350_low_15 |
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| [»] scaffold0154 (1 HSPs) |
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Alignment Details
Target: scaffold0154 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: scaffold0154
Description:
Target: scaffold0154; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 15 - 408
Target Start/End: Original strand, 2674 - 3067
Alignment:
| Q |
15 |
catatgttatttactactagccattgtttgatgcaattgacat-gaaaaaagtgggtgcaatctaactttccgatttcttctccatttacataagcctcc |
113 |
Q |
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| T |
2674 |
catatgttatttactactagccattgtttgatgcaattgacattgaaaaaagtgggtgcaatctaactttccgatttcttctccatttacataagcctcc |
2773 |
T |
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| Q |
114 |
taaacatggatcaaatttgttagacaaaacaagaacatataatactcatctacaaatgtgtccatcaatcaccattaaagtgagataccataatctattt |
213 |
Q |
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| T |
2774 |
taaacatggatcaaatttgttagacaaaacaagaacatataatactcatctacaaatgtgtccatcaatctccattaaagcgagataccataatctattt |
2873 |
T |
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| Q |
214 |
ttggaatagcttatgattgacataacaatggcaataatataaagaaataaactattttctacaactaccactataaaatgtttcatgcgtttaactaatc |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |
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| T |
2874 |
ttggaatagcttatgattgacataacaatggcaataatataaagaaataaactattttctacaactatcactataaaatgtttcatgtgtttaactaatc |
2973 |
T |
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| Q |
314 |
tactaaaactcattgtcgtgttatcctcaaatgattattaaaaatagcccgagctcacctgacaaatgcaacacaattctttatcttccgaagtg |
408 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2974 |
tactaaaactcattgtcgtgttatcc-caaatgattattaaaaatagcccgagctcacctgacaaatgcaacacaattctttatcttccgaagtg |
3067 |
T |
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