View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7350_low_16 (Length: 419)

Name: NF7350_low_16
Description: NF7350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7350_low_16
NF7350_low_16
[»] chr4 (1 HSPs)
chr4 (23-404)||(18100762-18101143)
[»] chr2 (1 HSPs)
chr2 (23-404)||(37858370-37858751)


Alignment Details
Target: chr4 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 23 - 404
Target Start/End: Original strand, 18100762 - 18101143
Alignment:
Q  23 accagatacattgtgcaccatagtagaaacagaaacattaaaagcgtttggacaatttaacgagcttatttgatgaagcctgattccacagaagcataat 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18100762 accagatacattgtgcaccatagtagaaacagaaacattaaaagcgtttggacaatttaacgagcttatttgatgaagcctgattccacagaagcataat 18100861  T
Q  123 atggcatcacaactagcatttggtgtcggtattataatgttccggtcgcgaagcgagtcttgaagggagttaacacacttctgagaatcatccggcatca 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18100862 atggcatcacaactagcatttggtgtcggtattataatgttccggtcgcgaagcgagtcttgaagggagttaacacacttctgagaatcatccggcatca 18100961  T
Q  223 tcggaagatcgactgaattttccggtggtggaggagaaatctctaatgctcttcgcgcatgagccgcgaagagccaggccgtgagtacgggacaacagcg 322  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  18100962 tcggaagatcgactgaattttcccgtggtggaggagaaatctctaatgctcttcgcgcatgagccgcgaagagccaggccgcgagtacgggacaacagcg 18101061  T
Q  323 gcttcgatcgaggttgtttccacatgcatcgttgacgccgccaaaaagttcgttggagaggtctagtttgcatatttgggat 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  18101062 gcttcgatcgaggttgtttccacatgcatcgttgacgccgccaaagagttcgttggagaggtctagtttgcatatttgggat 18101143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 23 - 404
Target Start/End: Original strand, 37858370 - 37858751
Alignment:
Q  23 accagatacattgtgcaccatagtagaaacagaaacattaaaagcgtttggacaatttaacgagcttatttgatgaagcctgattccacagaagcataat 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37858370 accagatacattgtgcaccatagtagaaacagaaacattaaaagcgtttggacaatttaacgagcttatttgatgaagcctgattccacagaagcataat 37858469  T
Q  123 atggcatcacaactagcatttggtgtcggtattataatgttccggtcgcgaagcgagtcttgaagggagttaacacacttctgagaatcatccggcatca 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37858470 atggcatcacaactagcatttggtgtcggtattataatgttccggtcgcgaagcgagtcttgaagggagttaacacacttctgagaatcatccggcatca 37858569  T
Q  223 tcggaagatcgactgaattttccggtggtggaggagaaatctctaatgctcttcgcgcatgagccgcgaagagccaggccgtgagtacgggacaacagcg 322  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  37858570 tcggaagatcgactgaattttcccgtggtggaggagaaatctctaatgctcttcgcgcatgagccgcgaagagccaggccgcgagtacgggacaacagcg 37858669  T
Q  323 gcttcgatcgaggttgtttccacatgcatcgttgacgccgccaaaaagttcgttggagaggtctagtttgcatatttgggat 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  37858670 gcttcgatcgaggttgtttccacatgcatcgttgacgccgccaaagagttcgttggagaggtctagtttgcatatttgggat 37858751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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