View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7350_low_17 (Length: 419)

Name: NF7350_low_17
Description: NF7350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7350_low_17
NF7350_low_17
[»] chr8 (10 HSPs)
chr8 (18-408)||(5887144-5887535)
chr8 (202-387)||(5984557-5984742)
chr8 (202-387)||(5949029-5949214)
chr8 (210-408)||(5843005-5843203)
chr8 (210-408)||(5849747-5849945)
chr8 (202-372)||(5921152-5921322)
chr8 (202-383)||(5960298-5960479)
chr8 (18-60)||(5843308-5843350)
chr8 (18-60)||(5850050-5850092)
chr8 (237-310)||(39916637-39916710)
[»] chr2 (2 HSPs)
chr2 (231-364)||(42788930-42789063)
chr2 (231-267)||(27172818-27172854)
[»] chr7 (2 HSPs)
chr7 (227-292)||(45676080-45676145)
chr7 (237-283)||(48892630-48892676)
[»] chr3 (2 HSPs)
chr3 (237-287)||(44674039-44674089)
chr3 (232-292)||(34626700-34626760)
[»] chr5 (1 HSPs)
chr5 (237-287)||(1281333-1281383)
[»] chr1 (2 HSPs)
chr1 (237-287)||(16127411-16127461)
chr1 (227-293)||(37962858-37962924)
[»] chr4 (1 HSPs)
chr4 (237-289)||(43560551-43560603)


Alignment Details
Target: chr8 (Bit Score: 277; Significance: 1e-155; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 18 - 408
Target Start/End: Complemental strand, 5887535 - 5887144
Alignment:
Q  18 acaagattgctgctggagctctgtcccaaaacttgctggtactgnnnnnnnttcttaaccactatacnnnnnnnnaagtgtgctttattatttcattaag 117  Q
    |||||||||||||||||||||||| |||||||||||||||||||       ||||||||||||||||        |||||||||||| ||||||||||||    
T  5887535 acaagattgctgctggagctctgtaccaaaacttgctggtactgaaaaaaattcttaaccactatacttttttttaagtgtgctttactatttcattaag 5887436  T
Q  118 tatatagttccctnnnnnnnnntcttattaaacatatcttatacaatactatagttctctaaattaataaatt--cgtattttatgttcatttatatatc 215  Q
    |||||||||||||         |||| ||||||||||||||||||||||||||||||||||||||||||||||  | ||||||||| |||||||||||||    
T  5887435 tatatagttccctaaaaaaaa-tcttgttaaacatatcttatacaatactatagttctctaaattaataaattttcttattttatgatcatttatatatc 5887337  T
Q  216 atgatgtgtgtaggtctgcagagatgtggaaagagttgcagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctcatcaag 315  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5887336 atgatgtgtgtaggtctgcagagatgcggaaagagttgcagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctcatcaag 5887237  T
Q  316 aagtagcactcattgtagaactacacagcattctaggcaataggtatatccattacaatagctctttttcttttcctccgatgtgcttttcat 408  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5887236 aagtagcactcattgtagaactacacaacattctaggcaataggtatatccattacaatagctctttttcttttcctccgatgtgcttttcat 5887144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 202 - 387
Target Start/End: Complemental strand, 5984742 - 5984557
Alignment:
Q  202 ttcatttatatatcatgatgtgtgtaggtctgcagagatgtggaaagagttgcagattaagatggataaattatctaagacctgatttgaaacgtggaag 301  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5984742 ttcatttgtatatcatgatatgtgtaggtctgcagagatgtggaaagagttgcagattaagatggataaattatctaagacctgatttgaaacgtggaag 5984643  T
Q  302 tttctctcatcaagaagtagcactcattgtagaactacacagcattctaggcaataggtatatccattacaatagctctttttctt 387  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||| ||||||    
T  5984642 tttctctcatcaagaagtagcactcattgtagaactacacaacattctaggcaataggtatattcattacattagctctctttctt 5984557  T

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Target: chr8; HSP #3
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 202 - 387
Target Start/End: Complemental strand, 5949214 - 5949029
Alignment:
Q  202 ttcatttatatatcatgatgtgtgtaggtctgcagagatgtggaaagagttgcagattaagatggataaattatctaagacctgatttgaaacgtggaag 301  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  5949214 ttcatttgtatatcatgatatgtgtaggtctgcagagatgtggaaagagttgaagattaagatggataaattatctaagacctgatttgaaacgtggaag 5949115  T
Q  302 tttctctcatcaagaagtagcactcattgtagaactacacagcattctaggcaataggtatatccattacaatagctctttttctt 387  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||| ||||||    
T  5949114 tttctctcatcaagaagtagcactcattgtagaactacacaacattctaggcaataggtatattcattacattagctctctttctt 5949029  T

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Target: chr8; HSP #4
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 210 - 408
Target Start/End: Complemental strand, 5843203 - 5843005
Alignment:
Q  210 tatatcatgatgtgtgtaggtctgcagagatgtggaaagagttgcagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctc 309  Q
    ||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||     
T  5843203 tatatcatgatgtgtctaggtctgcagagatgtggaaaaagttgtagattaagatggataaattatctaagacctgatttaaaacgtggaagtttctctt 5843104  T
Q  310 atcaagaagtagcactcattgtagaactacacagcattctaggcaataggtatatccattacaatagctctttttcttttcctccgatgtgcttttcat 408  Q
    || ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||  |||||||    
T  5843103 atgaagaagtagcaatcattatagaactacacagcattctaggcaataggtatatccattacaatagctcttcttcttttcctccaatgttattttcat 5843005  T

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Target: chr8; HSP #5
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 210 - 408
Target Start/End: Complemental strand, 5849945 - 5849747
Alignment:
Q  210 tatatcatgatgtgtgtaggtctgcagagatgtggaaagagttgcagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctc 309  Q
    ||||||||||| ||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  5849945 tatatcatgatatgtctaggtctgcagagatgtggaaaaagttgtagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctt 5849846  T
Q  310 atcaagaagtagcactcattgtagaactacacagcattctaggcaataggtatatccattacaatagctctttttcttttcctccgatgtgcttttcat 408  Q
    || ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||||  |||||||    
T  5849845 atgaagaagtagcaatcattatagaactacacagcattctaggcaataggtatatccattacaattgctcttcttcttttcctccaatgttattttcat 5849747  T

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Target: chr8; HSP #6
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 202 - 372
Target Start/End: Complemental strand, 5921322 - 5921152
Alignment:
Q  202 ttcatttatatatcatgatgtgtgtaggtctgcagagatgtggaaagagttgcagattaagatggataaattatctaagacctgatttgaaacgtggaag 301  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5921322 ttcatttgtatatcatgatgtgtgtaggtctgcagagatgtggaaagagttgcagattaagatggataaattatctaagacctgatttgaaacgtggaag 5921223  T
Q  302 tttctctcatcaagaagtagcactcattgtagaactacacagcattctaggcaataggtatatccattaca 372  Q
    |||||||||||||||||  ||||||||| ||||||| |||||||||||||||||||||||||| |||||||    
T  5921222 tttctctcatcaagaagctgcactcattctagaactccacagcattctaggcaataggtatattcattaca 5921152  T

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Target: chr8; HSP #7
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 202 - 383
Target Start/End: Complemental strand, 5960479 - 5960298
Alignment:
Q  202 ttcatttatatatcatgatgtgtgtaggtctgcagagatgtggaaagagttgcagattaagatggataaattatctaagacctgatttgaaacgtggaag 301  Q
    ||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  5960479 ttcatttgtatatcatgatgtgtgtaggtctggagagatgtggaaagagttgtagattaagatggataaattatctaagacctgatttgaaacgtggaag 5960380  T
Q  302 tttctctcatcaagaagtagcactcattgtagaactacacagcattctaggcaataggtatatccattacaatagctctttt 383  Q
    ||||||||| |||||||||||||||||||||||||| |||| |||| |||||||||||||||| ||||||| ||||||||||    
T  5960379 tttctctcaacaagaagtagcactcattgtagaactccacaacattttaggcaataggtatattcattacattagctctttt 5960298  T

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Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 5843350 - 5843308
Alignment:
Q  18 acaagattgctgctggagctctgtcccaaaacttgctggtact 60  Q
    |||||||||||||||||| ||||||||||||||||||||||||    
T  5843350 acaagattgctgctggagttctgtcccaaaacttgctggtact 5843308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 5850092 - 5850050
Alignment:
Q  18 acaagattgctgctggagctctgtcccaaaacttgctggtact 60  Q
    |||||||||||||||||| ||||||||||||||||||||||||    
T  5850092 acaagattgctgctggagttctgtcccaaaacttgctggtact 5850050  T

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Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 237 - 310
Target Start/End: Original strand, 39916637 - 39916710
Alignment:
Q  237 agatgtggaaagagttgcagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctca 310  Q
    ||||||||||| || |||||||| |||||||| |||||||| ||||||||| | || ||||||| |||| ||||    
T  39916637 agatgtggaaaaagctgcagattgagatggatcaattatctcagacctgatcttaagcgtggaaatttcactca 39916710  T

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Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 231 - 364
Target Start/End: Complemental strand, 42789063 - 42788930
Alignment:
Q  231 ctgcagagatgtggaaagagttgcagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctcatcaagaagtagcactcattg 330  Q
    ||||||||||||||||| |||||||| || ||||||||||||||| |||||||||||||||||||||||||||| ||||  |||||||  || || |||     
T  42789063 ctgcagagatgtggaaaaagttgcaggttgagatggataaattatttaagacctgatttgaaacgtggaagtttttctccacaagaagctgctcttatta 42788964  T
Q  331 tagaactacacagcattctaggcaataggtatat 364  Q
    | ||||| || | ||||||||| || ||||||||    
T  42788963 ttgaacttcataccattctaggaaacaggtatat 42788930  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 267
Target Start/End: Complemental strand, 27172854 - 27172818
Alignment:
Q  231 ctgcagagatgtggaaagagttgcagattaagatgga 267  Q
    ||||| |||||||||||||||||||||||||||||||    
T  27172854 ctgcaaagatgtggaaagagttgcagattaagatgga 27172818  T

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Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 227 - 292
Target Start/End: Complemental strand, 45676145 - 45676080
Alignment:
Q  227 aggtctgcagagatgtggaaagagttgcagattaagatggataaattatctaagacctgatttgaa 292  Q
    |||| ||||||| ||||| |||||||| ||||| |||||||||||||||||||| |||||||||||    
T  45676145 aggtttgcagaggtgtgggaagagttgtagattgagatggataaattatctaaggcctgatttgaa 45676080  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 237 - 283
Target Start/End: Complemental strand, 48892676 - 48892630
Alignment:
Q  237 agatgtggaaagagttgcagattaagatggataaattatctaagacc 283  Q
    ||||||||||| ||||||||| |||||||||| || |||||||||||    
T  48892676 agatgtggaaaaagttgcagactaagatggatgaactatctaagacc 48892630  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 237 - 287
Target Start/End: Original strand, 44674039 - 44674089
Alignment:
Q  237 agatgtggaaagagttgcagattaagatggataaattatctaagacctgat 287  Q
    |||||||| |||||||||||||| |||||||||||||| ||||||||||||    
T  44674039 agatgtggcaagagttgcagattgagatggataaattacctaagacctgat 44674089  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 232 - 292
Target Start/End: Complemental strand, 34626760 - 34626700
Alignment:
Q  232 tgcagagatgtggaaagagttgcagattaagatggataaattatctaagacctgatttgaa 292  Q
    |||| ||||||||||||||||| ||||| |||||||| || ||||| ||||||||||||||    
T  34626760 tgcaaagatgtggaaagagttgtagattgagatggatcaactatctgagacctgatttgaa 34626700  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 237 - 287
Target Start/End: Original strand, 1281333 - 1281383
Alignment:
Q  237 agatgtggaaagagttgcagattaagatggataaattatctaagacctgat 287  Q
    ||||||||||||||||| || |||||||||| ||||||| |||| ||||||    
T  1281333 agatgtggaaagagttgtaggttaagatggacaaattatttaagtcctgat 1281383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 237 - 287
Target Start/End: Complemental strand, 16127461 - 16127411
Alignment:
Q  237 agatgtggaaagagttgcagattaagatggataaattatctaagacctgat 287  Q
    ||||||||||||||||| ||||| |||||||| |||||| ||||| |||||    
T  16127461 agatgtggaaagagttgtagattgagatggattaattatttaagaactgat 16127411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 293
Target Start/End: Original strand, 37962858 - 37962924
Alignment:
Q  227 aggtctgcagagatgtggaaagagttgcagattaagatggataaattatctaagacctgatttgaaa 293  Q
    |||| |||| || ||||| ||||||||||| |||||||||||||||||  | || ||||||||||||    
T  37962858 aggtttgcaaaggtgtgggaagagttgcaggttaagatggataaattacttgaggcctgatttgaaa 37962924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 237 - 289
Target Start/End: Complemental strand, 43560603 - 43560551
Alignment:
Q  237 agatgtggaaagagttgcagattaagatggataaattatctaagacctgattt 289  Q
    ||||||||||||||||| ||||| ||||||||||| ||| | || ||||||||    
T  43560603 agatgtggaaagagttgtagattgagatggataaactatttgaggcctgattt 43560551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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