View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7350_low_19 (Length: 405)
Name: NF7350_low_19
Description: NF7350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7350_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 14 - 382
Target Start/End: Complemental strand, 32790159 - 32789787
Alignment:
| Q |
14 |
aatatcaacttattggaaacaggcacgactgatcattgaattatgataatcttaccagggaccagctgattctgaaggaaactttagcagaaacatggcg |
113 |
Q |
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| T |
32790159 |
aatatcaacttattggaaacaggcacgactgatcattgaattatgataatcttaccagggaccagctgattctgaaggaaactttagcagaaacatggcg |
32790060 |
T |
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| Q |
114 |
tggagattatgcgtgggaattgttaagatctaccattatagttatttagttaatgagagaagttaagtagttagaacttagaagggaagctagtaagaga |
213 |
Q |
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| T |
32790059 |
tggagattatgcgtgggaattgttaagatctaccattatagttatttagttaatgagagaagttaagtagttagaacttagaagggaagctagtaagaga |
32789960 |
T |
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| Q |
214 |
agttaagtagtttgagagggtatcgtgtataaaatataaataggataaataaggatga-cgagggatctggtacatttgtttgttgtattttgaatggat |
312 |
Q |
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|||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
32789959 |
agtttagtagtttgagaggatatcgtgtataaaacataaataggataaataaggatgagcgagggatctggtacatttgtttgttgtattttgaatggat |
32789860 |
T |
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| Q |
313 |
aaagtagcagccctttgtgaaagggataccattagaggagagt---ctcctattttcattctttaaataaaac |
382 |
Q |
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| T |
32789859 |
aaagtagcagccctttgtgaaagggataccattagaggagagtctcctcctattttcattctttaaataaaac |
32789787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 23 - 123
Target Start/End: Complemental strand, 48283183 - 48283083
Alignment:
| Q |
23 |
ttattggaaacaggcacgactgatcattgaattatgataatcttaccagggaccagctgattctgaaggaaactttagcagaaacatggcgtggagatta |
122 |
Q |
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| T |
48283183 |
ttattggaaacaggcacggctgatcattgaactctgagaaccttaccagggaccagctgattttgaaggaacctttagcagaaacatggtgaggagatta |
48283084 |
T |
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| Q |
123 |
t |
123 |
Q |
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| T |
48283083 |
t |
48283083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 189
Target Start/End: Complemental strand, 48283032 - 48282975
Alignment:
| Q |
132 |
attgttaagatctaccattatagttatttagttaatgagagaagttaagtagttagaa |
189 |
Q |
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| T |
48283032 |
attgttaggatctatccttatagttatttagttaagaagataagttaactagttagaa |
48282975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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