View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7350_low_2 (Length: 870)

Name: NF7350_low_2
Description: NF7350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7350_low_2
NF7350_low_2
[»] chr3 (8 HSPs)
chr3 (1-854)||(42843035-42843888)
chr3 (1-237)||(42819114-42819350)
chr3 (672-845)||(42834855-42835028)
chr3 (9-144)||(42834318-42834453)
chr3 (490-620)||(42834652-42834782)
chr3 (266-346)||(42819262-42819342)
chr3 (267-335)||(42834459-42834527)
chr3 (482-629)||(42819502-42819649)
[»] chr7 (1 HSPs)
chr7 (552-850)||(7363720-7364018)
[»] chr8 (5 HSPs)
chr8 (1-217)||(12621808-12622024)
chr8 (1-308)||(12627686-12627993)
chr8 (777-847)||(12622401-12622471)
chr8 (777-847)||(12628327-12628397)
chr8 (228-427)||(12627796-12627995)
[»] chr6 (2 HSPs)
chr6 (12-144)||(30924717-30924849)
chr6 (477-615)||(30924447-30924585)


Alignment Details
Target: chr3 (Bit Score: 822; Significance: 0; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 822; E-Value: 0
Query Start/End: Original strand, 1 - 854
Target Start/End: Original strand, 42843035 - 42843888
Alignment:
1 gggagatagacaatagaagttatgataatttgctcaaacagttcatggaaaaggaggaagagctaagggttaccaatttaaagcttcagctttcggaaga 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
42843035 gggagatagacaatagaagttatgataatttgctcaaaaagttcatggaaaaggaggaagagctaagggttaccaatttaaagcttcagctttcggaaga 42843134  T
101 agagaatataaagttgaaggttcaagttgagagtagtgagggtctgtttgatgatttatgtgaggaattgaggctgaaagagaaggagttgcataaacaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
42843135 agagaatataaagttgaaggttcaagttgagagtagtgagggtctgtttgatgatttatgtgaggaattgaagctgaaagagaaggagttgcataaacaa 42843234  T
201 aaagagctttcggaagaggagattttcaagttgaagattcaaatcgagaagagtgagaatcagcatgataatgtgagcaaagaattgaacctgaaagaga 300  Q
    |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
42843235 aaagtgctttcggaagaggagattttcaagttgaagattcaaattgagaagagtgagaatcagcatgataatgtgagcaaagaattgaacctgaaagaga 42843334  T
301 aggagttgaataaacaaaaggagcttttaaaagaagagattttcaatttgaagattcaatttaagagaagtgagtgtcagcttgttaatgtgcaggaagc 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
42843335 aggagttgaataaacaaaaggagcttttaaaagaagagattttcaatttgaagattcaatttaagagaagtgagtgtcagcttgttaatgtgcaggaagc 42843434  T
401 attgaatttgaaagagaaggagttgcaaaaacaaactgttaatgtctgcaaaattactgatttggcgaaacagtgtgaggtagctaatgaaaagctcaag 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
42843435 attgaatttgaaagagaaggagttgcaaaaacaaactgttaatgtctgcaaaattactgatttggtgaaacagtgtgaggtagctaatgaaaagctcaag 42843534  T
501 atatcagaagatgaaattgaatttttaacgaaggaacttaagagtaagtcacatgatactcgtcaattgcaaagtcagcttgaagcggcacaaaaagata 600  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||    
42843535 atatcagaagatgaaattgaatttttaacgaaggaacttaagagtaagtcacatgatactcgtcaattgcaaagtcagcttgaagcagcacaaaacaata 42843634  T
601 ttgctaaattagaattggagttagattcaaggaaaaaagggatgcactcattaggagagttggttagaatgcataagaaagaggtgcaaaaattgatgtc 700  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
42843635 ttgctaaattagaattggagttagattcaaggaaaaaagggatgcactcattaggagagttggttagaatgcataagaaagaggtgcaaaaattgatgtc 42843734  T
701 taaaatgcataattggcagactaagttctcttctgagaaaggtaagctgaattctaatattacaagtttgtcaaacatgaaaatacaattgacctctaaa 800  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
42843735 taaaatgcataattggcagactaagttctcttctgagaaaggtaagctgaattctaatattacaagtttgtcaaacatgaaaatacaattgacctctaaa 42843834  T
801 ttggaggattgtgagtctagaaacaaggaattggaaaacaaattaagacagtat 854  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
42843835 ttggaggattgtgagtctagaaacaaggaattggaaaacaaattaagacagtat 42843888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 42819114 - 42819350
Alignment:
1 gggagatagacaatagaagttatgataatttgctcaaacagttcatggaaaaggaggaagagctaagggttaccaatttaaagcttcagctttcggaaga 100  Q
    ||||||| |||||||||||||||||||| ||||||||| ||| ||| || || |||||||||||||| |||||||||||||||||||| ||||||||| |    
42819114 gggagattgacaatagaagttatgataagttgctcaaaaagtgcattgagaacgaggaagagctaagagttaccaatttaaagcttcaactttcggaaaa 42819213  T
101 agagaatataaagttgaaggttcaagttgagagtagtgagggtctgtttgatgatttatgtgaggaattgaggctgaaagagaaggagttgcataaacaa 200  Q
    ||||  ||| || |||||||||||||||||||  ||  |||||| ||||||| || | ||||| ||||||| |||||||||| | ||| |||||||||||    
42819214 agaggttatcaacttgaaggttcaagttgagaacagcaagggtcagtttgataatgtgtgtgaagaattgaagctgaaagaggacgagatgcataaacaa 42819313  T
201 aaagagctttcggaagaggagattttcaagttgaaga 237  Q
    || ||| |||| ||| | ||||||||||||| |||||    
42819314 aaggaggtttcagaaaaagagattttcaagtagaaga 42819350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 672 - 845
Target Start/End: Original strand, 42834855 - 42835028
Alignment:
672 cataagaaagaggtgcaaaaattgatgtctaaaatgcataattggcagactaagttctcttctgagaaaggtaagctgaattctaatattacaagtttgt 771  Q
    |||||| |||| |||||||||||||  ||  |||||| | ||| |||  ||||||||||||  ||||||| | | ||||||| | ||||| |||||||||    
42834855 cataagcaagatgtgcaaaaattgaactcggaaatgcttgatttgcaagctaagttctctttggagaaagatgaactgaattttgatattgcaagtttgt 42834954  T
772 caaacatgaaaatacaattgacctctaaattggaggattgtgagtctagaaacaaggaattggaaaacaaatta 845  Q
    |||| |||||||||||||||||||||||| | ||| |||||||||||| |||||||||||| ||||||||||||    
42834955 caaaaatgaaaatacaattgacctctaaactagagtattgtgagtctataaacaaggaattagaaaacaaatta 42835028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 9 - 144
Target Start/End: Original strand, 42834318 - 42834453
Alignment:
9 gacaatagaagttatgataatttgctcaaacagttcatggaaaaggaggaagagctaagggttaccaatttaaagcttcagctttcggaagaagagaata 108  Q
    |||||||||||||||||| ||||| ||||| |  | || | || |||||||||||||||||||||||||| ||||||||  ||||| |||||||||||||    
42834318 gacaatagaagttatgatgatttgatcaaaaaaattattggaacggaggaagagctaagggttaccaattcaaagcttcgactttcagaagaagagaata 42834417  T
109 taaagttgaaggttcaagttgagagtagtgagggtc 144  Q
    ||||||||||||| ||||||| || | |||||||||    
42834418 taaagttgaaggtccaagttgggaatggtgagggtc 42834453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 490 - 620
Target Start/End: Original strand, 42834652 - 42834782
Alignment:
490 aaaagctcaagatatcagaagatgaaattgaatttttaacgaaggaacttaagagtaagtcacatgatactcgtcaattgcaaagtcagcttgaagcggc 589  Q
    ||||||||||||||||| |||  |||||||||| |||||  || |||||   ||||||||||||||| |||| |||||||||| |||||||| ||| |||    
42834652 aaaagctcaagatatcaaaagtggaaattgaatctttaagaaatgaactgcggagtaagtcacatgaaactcatcaattgcaaggtcagcttaaagtggc 42834751  T
590 acaaaaagatattgctaaattagaattggag 620  Q
    ||   || |||| ||||||| ||||||||||    
42834752 actggaaaatatggctaaatcagaattggag 42834782  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 266 - 346
Target Start/End: Original strand, 42819262 - 42819342
Alignment:
266 tgataatgtgagcaaagaattgaacctgaaagagaaggagttgaataaacaaaaggagcttttaaaagaagagattttcaa 346  Q
    |||||||||| |  |||||||||| ||||||||| | ||| || |||||||||||||| ||| | || |||||||||||||    
42819262 tgataatgtgtgtgaagaattgaagctgaaagaggacgagatgcataaacaaaaggaggtttcagaaaaagagattttcaa 42819342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 267 - 335
Target Start/End: Original strand, 42834459 - 42834527
Alignment:
267 gataatgtgagcaaagaattgaacctgaaagagaaggagttgaataaacaaaaggagcttttaaaagaa 335  Q
    |||||||||||| |||||||||| || ||| |||| |||||||  |||||||| ||||||||| |||||    
42834459 gataatgtgagcgaagaattgaatctaaaaaagaaagagttgaggaaacaaaaagagcttttagaagaa 42834527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 482 - 629
Target Start/End: Original strand, 42819502 - 42819649
Alignment:
482 agctaatgaaaagctcaagatatcagaagatgaaattgaatttttaacgaaggaacttaagagtaagtcacatgatactcgtcaattgcaaagtcagctt 581  Q
    |||| ||| ||||||||||||||||  |||||||| || | ||||||   ||||||||  ||||||||||  ||| |||  ||||||| || ||||||||    
42819502 agctcatgcaaagctcaagatatcaacagatgaaaatgcaattttaagagaggaacttgggagtaagtcatctgagacttatcaattggaaggtcagctt 42819601  T
582 gaagcggcacaaaaagatattgctaaattagaattggagttagattca 629  Q
     ||| ||||||  || |||| |||| || | |||||||||||| ||||    
42819602 aaagtggcacaggaaaatatggctatatcaaaattggagttagtttca 42819649  T

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Target: chr7 (Bit Score: 243; Significance: 1e-134; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 552 - 850
Target Start/End: Complemental strand, 7364018 - 7363720
Alignment:
552 catgatactcgtcaattgcaaagtcagcttgaagcggcacaaaaagatattgctaaattagaattggagttagattcaaggaaaaaagggatgcactcat 651  Q
    |||||||||| || |||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
7364018 catgatactcatctattgcaaagtcagcttaaagcggcactaaaaaatattgctaaattagaattggagttagattcaaggaaaaaagggatgcacttat 7363919  T
652 taggagagttggttagaatgcataagaaagaggtgcaaaaattgatgtctaaaatgcataattggcagactaagttctcttctgagaaaggtaagctgaa 751  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  || ||||    
7363918 taggagagttggttagaatgcataagaaagaggtgcaaaaattgatgtctgaaatgcataattggcagactaagttctcttctgagaaaggggagttgaa 7363819  T
752 ttctaatattacaagtttgtcaaacatgaaaatacaattgacctctaaattggaggattgtgagtctagaaacaaggaattggaaaacaaattaagaca 850  Q
    || ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
7363818 ttttaatattgcatgtttgtcaaacatgaaaatacaattgacctctaaattggaggattgtgagtctagaaacaaggaattggaaaacaaattaggaca 7363720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 7e-33; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 12621808 - 12622024
Alignment:
1 gggagatagacaatagaagttatgataatttgctcaaacagttcatggaaaaggaggaagagctaagggttaccaatttaaagcttcagctttcggaaga 100  Q
    ||||||| ||||||| |||||||||| | ||||||||| ||||||  ||||| |||||||||||||| ||| | ||||| || ||||||||||||||| |    
12621808 gggagatggacaataaaagttatgatcaattgctcaaaaagttcaaagaaaatgaggaagagctaagagtttctaattttaaacttcagctttcggaaca 12621907  T
101 agagaatataaagttgaaggttcaagttgagagtagtgagggtctgtttgatgatttatgtgaggaattgaggctgaaagagaaggagttgcataaacaa 200  Q
    ||||| |||||||||||| ||||||| ||||| |||  |||||| | ||||| |  |  |||| ||||||| ||||||  || | ||| ||||| |||||    
12621908 agagattataaagttgaaagttcaagctgagaatagcaagggtcagcttgataaggtgcgtgaagaattgaagctgaacaaggaagagctgcatgaacaa 12622007  T
201 aaagagctttcggaaga 217  Q
    |||||||||||| ||||    
12622008 aaagagctttcgaaaga 12622024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 12627686 - 12627993
Alignment:
1 gggagatagacaatagaagttatgataatttgctcaaacagttcatggaaaaggaggaagagctaagggttaccaatttaaagcttcagctttcggaaga 100  Q
    ||||||| |||||  ||| ||||||| | ||||| ||| |||| |  ||||||||||||||||||||  || ||||||| || ||||| |||||  || |    
12627686 gggagatggacaacggaacttatgatgagttgcttaaaaagtttaatgaaaaggaggaagagctaagaatttccaattttaaacttcaactttcaaaaca 12627785  T
101 agagaatataaagttgaaggttcaagttgagagtagtgagggtctgtttgatgatttatgtgaggaattgaggctgaaagagaaggagttgcataaacaa 200  Q
    ||| | |||||||||||||||| || |||||| ||||||||||  | ||||| || |  | || ||| ||| |||||||||| | ||| ||| ||||| |    
12627786 agaaactataaagttgaaggttgaaattgagaatagtgagggtgagcttgataatgtgcgcgaagaactgaagctgaaagaggaagaggtgcgtaaacta 12627885  T
201 aaagagctttcggaagaggagattttcaagttgaagattcaaatcgagaagagtgagaatcagcatgataatgtgagcaaagaattgaacctgaaagaga 300  Q
    ||||||| ||| ||| | ||||||||||| |||||||||||  | ||||| |||| |||| ||| |  ||||||| |  || ||||||| |||||||||     
12627886 aaagagcgttcagaacaagagattttcaaattgaagattcaggttgagaaaagtgtgaatgagcttcgtaatgtgcgagaacaattgaatctgaaagagg 12627985  T
301 aggagttg 308  Q
    ||||||||    
12627986 aggagttg 12627993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 777 - 847
Target Start/End: Original strand, 12622401 - 12622471
Alignment:
777 atgaaaatacaattgacctctaaattggaggattgtgagtctagaaacaaggaattggaaaacaaattaag 847  Q
    ||||||| |||||||||||||||| ||||||| ||||||||||||||||  ||||| ||||||||||||||    
12622401 atgaaaaaacaattgacctctaaactggaggactgtgagtctagaaacagtgaattagaaaacaaattaag 12622471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 777 - 847
Target Start/End: Original strand, 12628327 - 12628397
Alignment:
777 atgaaaatacaattgacctctaaattggaggattgtgagtctagaaacaaggaattggaaaacaaattaag 847  Q
    |||||||||||||||| |||||||||||| |||| ||||||||||||||  ||||| ||||||||||||||    
12628327 atgaaaatacaattgatctctaaattggatgattatgagtctagaaacagtgaattagaaaacaaattaag 12628397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 228 - 427
Target Start/End: Original strand, 12627796 - 12627995
Alignment:
228 aagttgaagattcaaatcgagaagagtgagaatcagcatgataatgtgagcaaagaattgaacctgaaagagaaggagttgaataaacaaaaggagcttt 327  Q
    ||||||||| || |||| ||||| ||||||  | ||| |||||||||| || ||||| |||| ||||||||| | ||| ||  ||||| ||| |||| ||    
12627796 aagttgaaggttgaaattgagaatagtgagggtgagcttgataatgtgcgcgaagaactgaagctgaaagaggaagaggtgcgtaaactaaaagagcgtt 12627895  T
328 taaaagaagagattttcaatttgaagattcaatttaagagaagtgagtgtcagcttgttaatgtgcaggaagcattgaatttgaaagagaaggagttgca 427  Q
     | || ||||||||||||| |||||||||||  || ||| ||||| |  | |||||  ||||||||  |||  ||||||| |||||||| ||||||||||    
12627896 cagaacaagagattttcaaattgaagattcaggttgagaaaagtgtgaatgagcttcgtaatgtgcgagaacaattgaatctgaaagaggaggagttgca 12627995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 144
Target Start/End: Complemental strand, 30924849 - 30924717
Alignment:
12 aatagaagttatgataatttgctcaaacagttcatggaaaaggaggaagagctaagggttaccaatttaaagcttcagctttcggaagaagagaatataa 111  Q
    |||| |||||||||| | ||||| ||  |||||||  |||| |||||||||||| | ||| ||||||| || ||| ||||||| |||||||||| ||| |    
30924849 aataaaagttatgatgaattgctgaagaagttcattaaaaacgaggaagagctacgagtttccaatttgaaacttaagctttcagaagaagagattatca 30924750  T
112 agttgaaggttcaagttgagagtagtgagggtc 144  Q
    ||||||||  ||||  |||||  ||||||||||    
30924749 agttgaagaatcaaaatgagaaaagtgagggtc 30924717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 477 - 615
Target Start/End: Complemental strand, 30924585 - 30924447
Alignment:
477 gaggtagctaatgaaaagctcaagatatcagaagatgaaattgaatttttaacgaaggaacttaagagtaagtcacatgatactcgtcaattgcaaagtc 576  Q
    ||||||||||||||| | |||||||||||| | |||||| ||| |   ||||  ||||||||| ||||||| | |  ||| |||||||||||||||   |    
30924585 gaggtagctaatgaacacctcaagatatcaaatgatgaagttgcaagattaagaaaggaacttgagagtaatttagctgagactcgtcaattgcaagacc 30924486  T
577 agcttgaagcggcacaaaaagatattgctaaattagaat 615  Q
    ||||||||| ||||||  || || || ||||||||||||    
30924485 agcttgaagtggcacaggaaaatgttactaaattagaat 30924447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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