View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7350_low_20 (Length: 400)
Name: NF7350_low_20
Description: NF7350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7350_low_20 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 105 - 400
Target Start/End: Complemental strand, 42355531 - 42355234
Alignment:
| Q |
105 |
aaatccattcattgttcttattttctttaatcagtggttaaacttaaaatctagtattggtggttgagaattcatctagtctatttcaaactagcaaaaa |
204 |
Q |
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| T |
42355531 |
aaatccattcattgttctttttttctttaatcagtggttaaacttaaaatctagtattggtggttgagaattcatctagtctatttcaaactagcaaaaa |
42355432 |
T |
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| Q |
205 |
gatacgtacattttacttgggtcgggtgatttgtagtaaatgatttataaagttggaaaaatcataacatgtgctctttgacttcattaacataacgata |
304 |
Q |
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| T |
42355431 |
gatacgtacattttacttgggtcgggtgatttgtagtaaatgatttataaagttggaaaaatcataacatgtgctctttgacttcattaacataacgata |
42355332 |
T |
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| Q |
305 |
catgctagc-aaattcatagagttta-ttttttaagcaatgataaaactagatcatttaaaaaggtatatcgtaaaatatgtgagagttgagataaat |
400 |
Q |
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||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42355331 |
catgctagcaaaattcatagagtttatttttttaagcaatgataaaactagatcatttaaaaaggtatatcgtaaaatatgtgagagttgagataaat |
42355234 |
T |
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