View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7350_low_26 (Length: 353)
Name: NF7350_low_26
Description: NF7350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7350_low_26 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 8 - 335
Target Start/End: Complemental strand, 8696305 - 8695978
Alignment:
| Q |
8 |
atggacatcaacacttagcacatgttgccttattcgcgagcctctcaagagcattgcaaacaagagggtaccttttgaatgcggcgaaggaactcaaagc |
107 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
8696305 |
atggacctcaacacttagcacatgttgccttattcgcgagcctctcaagagcattgcaaacaagagggtaccttttgaatgcggccaaggaactcaaagc |
8696206 |
T |
|
| Q |
108 |
tattgatcacaacaacaaaaggatgtatctaaccgtgcaagattgtgtgaatcaaatgaatgatagtgttgatcaacttagtcaagccatcaaagaacta |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8696205 |
tattgatcacaacaacaaaaggatgtatctaaccgtgcaagattgtgtgaatcaaatgaatgatagtgttgatcaacttagtcaagccatcaaagaacta |
8696106 |
T |
|
| Q |
208 |
aaaaggttgaacaaatttaacaccatcatcaatgataaagtgttgtggcacataagtaatgttgagacatgggttagcactgccttaaccgacgctagta |
307 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8696105 |
aaaaggttgaacaaatttaacacaatcatcaatgataaagtgttgtggcacataagtaatgttgagacatgggttagcactgccttaaccgacgctagta |
8696006 |
T |
|
| Q |
308 |
gttgtgtacaatcattccctggtcatag |
335 |
Q |
| |
|
||||||| ||||| |||||||||||||| |
|
|
| T |
8696005 |
gttgtgtgcaatcgttccctggtcatag |
8695978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 8 - 335
Target Start/End: Original strand, 8674730 - 8675057
Alignment:
| Q |
8 |
atggacatcaacacttagcacatgttgccttattcgcgagcctctcaagagcattgcaaacaagagggtaccttttgaatgcggcgaaggaactcaaagc |
107 |
Q |
| |
|
|||||| |||||||||||| || |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8674730 |
atggacctcaacacttagctcaagttgccttatccgttagcctctcaagagcattgcaaacaagagggtaccttttgaatgcggcgaaggaactcaaagc |
8674829 |
T |
|
| Q |
108 |
tattgatcacaacaacaaaaggatgtatctaaccgtgcaagattgtgtgaatcaaatgaatgatagtgttgatcaacttagtcaagccatcaaagaacta |
207 |
Q |
| |
|
|||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8674830 |
tattgatcacaacaacaagaggatgtacctaaccgttcaagattgtgtgaatcaaatgaatgatagtgttgatcaacttagtcaagccatcaaagaacta |
8674929 |
T |
|
| Q |
208 |
aaaaggttgaacaaatttaacaccatcatcaatgataaagtgttgtggcacataagtaatgttgagacatgggttagcactgccttaaccgacgctagta |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8674930 |
aaaaggttgaacaaatttaacaccatcatcaatgataaagtgttgtggcacataagtaatgttgagacatgggttagcactgccttaaccgacgctagta |
8675029 |
T |
|
| Q |
308 |
gttgtgtacaatcattccctggtcatag |
335 |
Q |
| |
|
||||||| ||||| |||||||||||||| |
|
|
| T |
8675030 |
gttgtgtgcaatcgttccctggtcatag |
8675057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 8 - 335
Target Start/End: Complemental strand, 8687736 - 8687409
Alignment:
| Q |
8 |
atggacatcaacacttagcacatgttgccttattcgcgagcctctcaagagcattgcaaacaagagggtaccttttgaatgcggcgaaggaactcaaagc |
107 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||| || ||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
8687736 |
atggacctcaacacttagcaaatgttgccttatccgtgagcctctcgagagcattgcaaacaagaggataccttttgaatgcggcaaaggaactcaaagc |
8687637 |
T |
|
| Q |
108 |
tattgatcacaacaacaaaaggatgtatctaaccgtgcaagattgtgtgaatcaaatgaatgatagtgttgatcaacttagtcaagccatcaaagaacta |
207 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8687636 |
tattgatcacaacaacaagaggatgtacctaaccgtgcaagattgtgtgaatcaaattaatgatagtgttgatcaacttagtcaagccatcaaagaacta |
8687537 |
T |
|
| Q |
208 |
aaaaggttgaacaaatttaacaccatcatcaatgataaagtgttgtggcacataagtaatgttgagacatgggttagcactgccttaaccgacgctagta |
307 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8687536 |
aaaaggttgaataaatttaacacaatcatcaatgataaagtgttgtggcacataagtaatgttgagacatgggttagcactgccttaaccgacgctagta |
8687437 |
T |
|
| Q |
308 |
gttgtgtacaatcattccctggtcatag |
335 |
Q |
| |
|
||||||| ||||| |||||||||||||| |
|
|
| T |
8687436 |
gttgtgtgcaatcgttccctggtcatag |
8687409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 8 - 335
Target Start/End: Original strand, 8692961 - 8693288
Alignment:
| Q |
8 |
atggacatcaacacttagcacatgttgccttattcgcgagcctctcaagagcattgcaaacaagagggtaccttttgaatgcggcgaaggaactcaaagc |
107 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| || |||| |||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
8692961 |
atggacctcaacacttagcacatgttgccttatccgtgagcttctctagagcattgcaaacaagagggtaccttttgaatgtggccaaggaactcaaagc |
8693060 |
T |
|
| Q |
108 |
tattgatcacaacaacaaaaggatgtatctaaccgtgcaagattgtgtgaatcaaatgaatgatagtgttgatcaacttagtcaagccatcaaagaacta |
207 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
8693061 |
tattgatcacaacaacaaaaggatgtacctaaccgtgcaagattgtgtgaatcaaatcaatgatagtgttgatcaacttagccaagccatcaaagaacta |
8693160 |
T |
|
| Q |
208 |
aaaaggttgaacaaatttaacaccatcatcaatgataaagtgttgtggcacataagtaatgttgagacatgggttagcactgccttaaccgacgctagta |
307 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
8693161 |
aaaaggttgaataaatttaacacaatcatcaatgataaagtgttgtggcacataagtaatgttgagacatgggttagcactgccttaaccgatgctagta |
8693260 |
T |
|
| Q |
308 |
gttgtgtacaatcattccctggtcatag |
335 |
Q |
| |
|
||||||| ||||| |||||||||||||| |
|
|
| T |
8693261 |
gttgtgtgcaatcgttccctggtcatag |
8693288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University