View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7350_low_27 (Length: 328)

Name: NF7350_low_27
Description: NF7350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7350_low_27
NF7350_low_27
[»] chr7 (1 HSPs)
chr7 (22-312)||(36402133-36402412)


Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 22 - 312
Target Start/End: Complemental strand, 36402412 - 36402133
Alignment:
Q  22 ttcactattaattttttattcttaaatggatttatatcatgaatatattagtatactaagataaaaggtaaagaattactttcttctaatggttgttgag 121  Q
    |||||||||||||| ||||||||||||||||||||||||||                |||||||||||||||||||||||||||| ||||||||||||||    
T  36402412 ttcactattaatttattattcttaaatggatttatatcatg----------------aagataaaaggtaaagaattactttcttgtaatggttgttgag 36402329  T
Q  122 gaacctaactgaggtgtaggggccgggaaactagctagttagtcttgtttccttcattattgaatgaattctataaataatagagtcagcagtacccttt 221  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36402328 gaacctaactgaggtgtaggggccgggaaactagctagttagtattgtttccttcattattgaatgaattctataaataatagagtcagcagtacccttt 36402229  T
Q  222 atatatatctctgttgtatttacattgcatgcattg-----gtagttgctagagcttgattgtaccaaaggtttaacgtctaaatcatcacagatt 312  Q
    |||| | |||||||||||||| ||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36402228 atatctctctctgttgtatttgcattgcatgcattggtacagtagttgctagagcttgattgtaccaaaggtttaacgtctaaatcatcacagatt 36402133  T

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