View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7350_low_28 (Length: 326)

Name: NF7350_low_28
Description: NF7350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7350_low_28
NF7350_low_28
[»] chr1 (1 HSPs)
chr1 (13-310)||(52816702-52816997)


Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 13 - 310
Target Start/End: Original strand, 52816702 - 52816997
Alignment:
Q  13 aatatcatagttaatactcaacactctttttaaagtataaaacccaaattttatcgtagtatataggttacgactttaaaatatctacagtaactaaaaa 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||    || |  | |    
T  52816702 aatatcatagttaatactcaacactctttttaaagtataaaacccaaattttattgtagtatataggttacgactttaaaataacta----aattggaca 52816797  T
Q  113 agtataa--acctcaagatgaataacaaaggaggttataattttatatagtaactaaaaaagttattagcattacttgcaccaaactaaatactctgttg 210  Q
      | | |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52816798 tatttcattacctcaagatgaataacaaaggaggttataattttatatagtaactaaaaaagttattagcattacttgcaccaaactaaatactctgttg 52816897  T
Q  211 tttaaatgtgcagatgatcgagctagataaagatgagttgaggttaacttacccgcacggactctccatgttattatagcatccagttgtgggttatatt 310  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52816898 tttagatgtgcagatggtcgagctagataaagatgagttgaggttaacttacccgcacggactctccatgttattatagcatccagttgtgggttatatt 52816997  T

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