View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7350_low_29 (Length: 311)
Name: NF7350_low_29
Description: NF7350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7350_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 18 - 290
Target Start/End: Original strand, 40803004 - 40803276
Alignment:
| Q |
18 |
ctgtggagtttctgcttgtgctattatttcaaatccttttaattctcaaatagaggtctggccagatcgagagggagcaaaaaaggtgtttgagaggtat |
117 |
Q |
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| T |
40803004 |
ctgtggagtttctgcttgtgctattatttcaaatccttttaattctcaaatagaggtctggccagatcgagagggagcaaaaaaggtgattgagaggtat |
40803103 |
T |
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| Q |
118 |
cataattcatctgctaaagatgaaaccaagaatttgaaccaagagggtttaatcatgcaaaatattgctaaagctagagaccggctaagaaagttggaaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40803104 |
cataattcatctgctaaagatgaaaccaagaatttgaaccaagagggtttaatcatgcaaaatattgctaaagctagagaccggctaagaaagttggaaa |
40803203 |
T |
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| Q |
218 |
acaagaaacctgagaaaaagatagatctgcttatgcatgagtgcatgcaaaacaaaaatttggtggacaacct |
290 |
Q |
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| T |
40803204 |
acaagaaacctgagaaaaagatagatctgcttatgcatgagtgcatgcaaaacaaaaatttggtggacaacct |
40803276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 31 - 162
Target Start/End: Complemental strand, 37921091 - 37920960
Alignment:
| Q |
31 |
gcttgtgctattatttcaaatccttttaattctcaaatagaggtctggccagatcgagagggagcaaaaaaggtgtttgagaggtatcataattcatctg |
130 |
Q |
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| T |
37921091 |
gcttgtgctataatttctaatccttttgattctaaaatagaggtgtggccaaatctagaggaggctaaacatgtgattgagaggtatcaaaattcatcgg |
37920992 |
T |
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| Q |
131 |
ctaaagatgaaaccaagaatttgaaccaagag |
162 |
Q |
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| T |
37920991 |
tgaaagatgaaacaaagaatgtgaaccaagag |
37920960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 34 - 161
Target Start/End: Complemental strand, 34484747 - 34484620
Alignment:
| Q |
34 |
tgtgctattatttcaaatccttttaattctcaaatagaggtctggccagatcgagagggagcaaaaaaggtgtttgagaggtatcataattcatctgcta |
133 |
Q |
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|||||||| ||||| |||||||| ||||| ||| |||||| |||||| ||| ||| |||| ||| ||||| ||||||||||||| || |||| | | |
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| T |
34484747 |
tgtgctataatttccgatccttttgattctaaaacagaggtgtggccaaatctagatggagtcaaacaggtgcttgagaggtatcagaaatcatatatga |
34484648 |
T |
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| Q |
134 |
aagatgaaaccaagaatttgaaccaaga |
161 |
Q |
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| T |
34484647 |
aagatgataaaaagaatgtgaaccaaga |
34484620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 143
Target Start/End: Original strand, 40705437 - 40705549
Alignment:
| Q |
31 |
gcttgtgctattatttcaaatccttttaattctcaaatagaggtctggccagatcgagagggagcaaaaaaggtgtttgagaggtatcataattcatctg |
130 |
Q |
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| T |
40705437 |
gcttgtgctataatttccagtccttttgattctcggacagaggtctggccgcatccagaaggagccaataagataattgagaggtttcaaaatttatctg |
40705536 |
T |
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| Q |
131 |
ctaaagatgaaac |
143 |
Q |
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| T |
40705537 |
tgaaagatgaaac |
40705549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 34 - 167
Target Start/End: Complemental strand, 20856272 - 20856139
Alignment:
| Q |
34 |
tgtgctattatttcaaatccttttaattctcaaatagaggtctggccagatcgagagggagcaaaaaaggtgtttgagaggtatcataattcatctgcta |
133 |
Q |
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|||||||| ||||| |||||||||| ||| ||| |||||| |||||||||| |||||| || | | ||||| |||| ||||| || || ||||| | | |
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| T |
20856272 |
tgtgctataatttccaatccttttagttccaaaacagaggtgtggccagatctagagggggccagacaggtgattgaaaggtaccagaactcatcagtga |
20856173 |
T |
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| Q |
134 |
aagatgaaaccaagaatttgaaccaagagggttt |
167 |
Q |
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| T |
20856172 |
aagatgaaacaaagaatatgaaccaagagagttt |
20856139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 167
Target Start/End: Complemental strand, 20849212 - 20849079
Alignment:
| Q |
34 |
tgtgctattatttcaaatccttttaattctcaaatagaggtctggccagatcgagagggagcaaaaaaggtgtttgagaggtatcataattcatctgcta |
133 |
Q |
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|||||||| ||||| |||||||||| ||| ||| ||| || |||||||||| |||| | || | | ||||| |||||||||| || || ||||| | | |
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| T |
20849212 |
tgtgctataatttccaatccttttagttccaaaacagaagtgtggccagatctagagagggccagacaggtgattgagaggtaccagaactcatcagtga |
20849113 |
T |
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| Q |
134 |
aagatgaaaccaagaatttgaaccaagagggttt |
167 |
Q |
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|||||||||| |||||| ||||||||||| |||| |
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| T |
20849112 |
aagatgaaacaaagaatgtgaaccaagagagttt |
20849079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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