View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7350_low_30 (Length: 309)

Name: NF7350_low_30
Description: NF7350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7350_low_30
NF7350_low_30
[»] chr4 (4 HSPs)
chr4 (18-274)||(1326225-1326472)
chr4 (19-178)||(4875907-4876063)
chr4 (84-178)||(44185371-44185462)
chr4 (19-134)||(20425710-20425825)
[»] chr3 (1 HSPs)
chr3 (17-174)||(5387503-5387657)
[»] scaffold0831 (1 HSPs)
scaffold0831 (19-141)||(2128-2250)
[»] chr8 (13 HSPs)
chr8 (20-126)||(27183075-27183181)
chr8 (28-135)||(26531466-26531573)
chr8 (20-87)||(27231104-27231171)
chr8 (28-125)||(31135858-31135955)
chr8 (19-123)||(18095540-18095644)
chr8 (63-114)||(6116952-6117003)
chr8 (19-102)||(12646228-12646311)
chr8 (19-114)||(12651348-12651443)
chr8 (63-114)||(12704852-12704903)
chr8 (19-126)||(18081332-18081439)
chr8 (19-126)||(18140263-18140370)
chr8 (63-111)||(12712726-12712774)
chr8 (28-123)||(12721475-12721570)
[»] chr5 (3 HSPs)
chr5 (19-134)||(24654573-24654688)
chr5 (91-134)||(29417741-29417784)
chr5 (20-127)||(42777095-42777202)
[»] chr1 (1 HSPs)
chr1 (19-87)||(51869152-51869220)


Alignment Details
Target: chr4 (Bit Score: 168; Significance: 5e-90; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 18 - 274
Target Start/End: Complemental strand, 1326472 - 1326225
Alignment:
Q  18 gcatgaaataagggttttgaaataaaagagaccatggtttgcatgcacatgtaaatcgtttgagagatttgagaggtaatttggaaagaatagagaagga 117  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1326472 gcatgaaataagggttttgaaataaaagagactatggtttgcatgcacacgtaaatcgtttgagagatttgagaggtaatttggaaagaatagagaagga 1326373  T
Q  118 aatgtcatcaggaatatagttactgttgttactaaccttgtcactttttgtagccatggatggatttctttgccaaagctgaagctaattctctgtgagt 217  Q
    ||||||||||| ||||||| || |||||   ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||     
T  1326372 aatgtcatcagcaatatagctagtgttg---ctaaccttgtcactttttgtagccatggatggatttctttgtcaaagctgaagccaattctctgtaagc 1326276  T
Q  218 gtgcaatgcaaatatggagtgctttgttttgtgacaaacgaaacggttgggagctta 274  Q
    ||||||| |||      ||| |||||||||||||||||| ||||||||| |||||||    
T  1326275 gtgcaatccaa------agtactttgttttgtgacaaacaaaacggttgtgagctta 1326225  T

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Target: chr4; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 19 - 178
Target Start/End: Complemental strand, 4876063 - 4875907
Alignment:
Q  19 catgaaataagggttttgaaataaaagagaccatggtttgcatgcacatgtaaatcgtttgagagatttgagaggtaatttggaaagaatagagaaggaa 118  Q
    |||||||| |||||||||||||||||||||| ||| |||| | |||||||||||||  |||||||||| ||| |||||||||||||||||||| ||||||    
T  4876063 catgaaattagggttttgaaataaaagagacgatgatttggaggcacatgtaaatcaattgagagattggaggggtaatttggaaagaatagaaaaggaa 4875964  T
Q  119 atgtcatcaggaatatagttactgttgttactaaccttgtcactttttgtagccatggat 178  Q
    |||||||| ||||||||| |||    ||||||||||||||||||||||||||||||||||    
T  4875963 atgtcatcgggaatatagctac---ggttactaaccttgtcactttttgtagccatggat 4875907  T

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Target: chr4; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 84 - 178
Target Start/End: Complemental strand, 44185462 - 44185371
Alignment:
Q  84 atttgagaggtaatttggaaagaatagagaaggaaatgtcatcaggaatatagttactgttgttactaaccttgtcactttttgtagccatggat 178  Q
    ||||||| |||||||||||||||||||| || ||||| ||||||||||||||| |||    ||||||||||||||||||||||||||||||||||    
T  44185462 atttgaggggtaatttggaaagaatagaaaacgaaatttcatcaggaatatagctac---ggttactaaccttgtcactttttgtagccatggat 44185371  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 134
Target Start/End: Complemental strand, 20425825 - 20425710
Alignment:
Q  19 catgaaataagggttttgaaataaaagagaccatggtttgcatgcacatgtaaatcgtttgagagatttgagaggtaatttggaaagaatagagaaggaa 118  Q
    |||||||| || || || |||||||||||||||||  |||||| | |||  ||||||||| | |||||| | ||| | ||| || ||||||||||| |||    
T  20425825 catgaaatgagagtcttcaaataaaagagaccatgcattgcatacgcattcaaatcgtttcaaagattttaaaggaagttttgacagaatagagaatgaa 20425726  T
Q  119 atgtcatcaggaatat 134  Q
    || |||| ||||||||    
T  20425725 atatcataaggaatat 20425710  T

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Target: chr3 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 17 - 174
Target Start/End: Complemental strand, 5387657 - 5387503
Alignment:
Q  17 tgcatgaaataagggttttgaaataaaagagaccatggtttgcatgcacatgtaaatcgtttgagagatttgagaggtaatttggaaagaatagagaagg 116  Q
    |||||||||| |||||||||||||||||||||||| | |||| | ||||| |||||||| |||||||||||||| |||||||||||||||||||| ||||    
T  5387657 tgcatgaaattagggttttgaaataaaagagaccaagatttggaggcacaggtaaatcgattgagagatttgaggggtaatttggaaagaatagaaaagg 5387558  T
Q  117 aaatgtcatcaggaatatagttactgttgttactaaccttgtcactttttgtagccat 174  Q
    |||||||||| | |||||||||||   |||||||||||||||||||||||||||||||    
T  5387557 aaatgtcatcggaaatatagttac---tgttactaaccttgtcactttttgtagccat 5387503  T

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Target: scaffold0831 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0831
Description:

Target: scaffold0831; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 19 - 141
Target Start/End: Original strand, 2128 - 2250
Alignment:
Q  19 catgaaataagggttttgaaataaaagagaccatggtttgcatgcacatgtaaatcgtttgagagatttgagaggtaatttggaaagaatagagaaggaa 118  Q
    |||||||| ||| | || |||||||||||||||||  ||||||||||| |||||||| ||||||||||| ||||||| |||||| | ||||  |||||||    
T  2128 catgaaatgaggatcttcaaataaaagagaccatgacttgcatgcacaagtaaatcgcttgagagatttaagaggtagtttggagaaaataacgaaggaa 2227  T
Q  119 atgtcatcaggaatatagttact 141  Q
    |  || ||||||| |||||||||    
T  2228 acatcgtcaggaacatagttact 2250  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 126
Target Start/End: Complemental strand, 27183181 - 27183075
Alignment:
Q  20 atgaaataagggttttgaaataaaagagaccatggtttgcatgcacatgtaaatcgtttgagagatttgagaggtaatttggaaagaatagagaaggaaa 119  Q
    ||||||| |||||||||||||||||||||||||| |||| |  |||| |||||||| ||||||||||| | ||| | ||| || |||||||| || | ||    
T  27183181 atgaaattagggttttgaaataaaagagaccatgatttggaaacacaagtaaatcgcttgagagatttaatagggagtttagagagaatagataaagcaa 27183082  T
Q  120 tgtcatc 126  Q
    |||||||    
T  27183081 tgtcatc 27183075  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 135
Target Start/End: Complemental strand, 26531573 - 26531466
Alignment:
Q  28 agggttttgaaataaaagagaccatggtttgcatgcacatgtaaatcgtttgagagatttgagaggtaatttggaaagaatagagaaggaaatgtcatca 127  Q
    |||||||| ||||||||||||||||| |||||| ||||| ||||| || |||||||||||||| | || ||| || | ||||  ||||||||  || |||    
T  26531573 agggttttcaaataaaagagaccatgatttgcacgcacaagtaaaccgcttgagagatttgagggatagtttagagaaaataatgaaggaaacatcttca 26531474  T
Q  128 ggaatata 135  Q
    ||||||||    
T  26531473 ggaatata 26531466  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 87
Target Start/End: Original strand, 27231104 - 27231171
Alignment:
Q  20 atgaaataagggttttgaaataaaagagaccatggtttgcatgcacatgtaaatcgtttgagagattt 87  Q
    ||||||| |||||||||||||||||||||||||| |||| |  |||| |||||||| |||||||||||    
T  27231104 atgaaattagggttttgaaataaaagagaccatgatttggaaacacaagtaaatcgcttgagagattt 27231171  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 125
Target Start/End: Original strand, 31135858 - 31135955
Alignment:
Q  28 agggttttgaaataaaagagaccatggtttgcatgcacatgtaaatcgtttgagagatttgagaggtaatttggaaagaatagagaaggaaatgtcat 125  Q
    |||||||| ||||||||||||||||||||||||| |||||| |||||| || |   |||| | ||| || ||||| | ||||||||||||||| ||||    
T  31135858 agggttttcaaataaaagagaccatggtttgcatacacatgcaaatcgcttcaagaattttaaaggcaacttggagataatagagaaggaaatatcat 31135955  T

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Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 123
Target Start/End: Complemental strand, 18095644 - 18095540
Alignment:
Q  19 catgaaataagggttttgaaataaaagagaccatggtttgcatgcacatgtaaatcgtttgagagatttgagaggtaatttggaaagaatagagaaggaa 118  Q
    |||||||| ||||||||| || | ||| ||||||| ||||   ||||| || || |||||||| |||||||||||||||||||| ||||| ||||| | |    
T  18095644 catgaaattagggttttggaaaagaagtgaccatgatttgttagcacaggtgaaacgtttgagtgatttgagaggtaatttggagagaatggagaaagca 18095545  T
Q  119 atgtc 123  Q
    |||||    
T  18095544 atgtc 18095540  T

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Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 63 - 114
Target Start/End: Complemental strand, 6117003 - 6116952
Alignment:
Q  63 cacatgtaaatcgtttgagagatttgagaggtaatttggaaagaatagagaa 114  Q
    ||||||| ||||||||||| ||||| ||||| ||||||||||||||||||||    
T  6117003 cacatgtgaatcgtttgagggatttaagaggcaatttggaaagaatagagaa 6116952  T

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Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 102
Target Start/End: Complemental strand, 12646311 - 12646228
Alignment:
Q  19 catgaaataagggttttgaaataaaagagaccatggtttgcatgcacatgtaaatcgtttgagagatttgagaggtaatttgga 102  Q
    |||||||| ||||||||||||||||||||||||||||||    ||||| || |||| | |||| ||||| ||||| ||||||||    
T  12646311 catgaaatgagggttttgaaataaaagagaccatggtttcttagcacaggtgaatcttgtgagggatttaagaggcaatttgga 12646228  T

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Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 114
Target Start/End: Complemental strand, 12651443 - 12651348
Alignment:
Q  19 catgaaataagggttttgaaataaaagagaccatggtttgcatgcacatgtaaatcgtttgagagatttgagaggtaatttggaaagaatagagaa 114  Q
    |||||||| |||||||||||||||||||||||||  |||    ||||| || | |||| |||||||||| ||||| |||||||| || ||||||||    
T  12651443 catgaaatgagggttttgaaataaaagagaccattatttcttagcacaggtgagtcgtgtgagagatttaagaggcaatttggagagtatagagaa 12651348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 63 - 114
Target Start/End: Complemental strand, 12704903 - 12704852
Alignment:
Q  63 cacatgtaaatcgtttgagagatttgagaggtaatttggaaagaatagagaa 114  Q
    ||||||| ||||||||||| ||||| ||||| ||||||||||||||||||||    
T  12704903 cacatgtgaatcgtttgagggatttaagaggcaatttggaaagaatagagaa 12704852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 126
Target Start/End: Complemental strand, 18081439 - 18081332
Alignment:
Q  19 catgaaataagggttttgaaataaaagagaccatggtttgcatgcacatgtaaatcgtttgagagatttgagaggtaatttggaaagaatagagaaggaa 118  Q
    |||||||| |||||||||||| | ||||||||||| |||    ||||| || || ||| |||||||||||  ||||||||| |||||||| ||||| | |    
T  18081439 catgaaattagggttttgaaaaagaagagaccatgattttttagcacaagtgaaacgtgtgagagatttgtaaggtaatttagaaagaatggagaaagca 18081340  T
Q  119 atgtcatc 126  Q
    ||||||||    
T  18081339 atgtcatc 18081332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 126
Target Start/End: Original strand, 18140263 - 18140370
Alignment:
Q  19 catgaaataagggttttgaaataaaagagaccatggtttgcatgcacatgtaaatcgtttgagagatttgagaggtaatttggaaagaatagagaaggaa 118  Q
    |||||||| ||||||||| |||||||| ||||||| |||    ||||| ||||| |||||||||||||| | ||| ||||| || ||||| ||||| | |    
T  18140263 catgaaattagggttttggaataaaagtgaccatgattttttagcacaggtaaaacgtttgagagatttaataggcaatttagagagaatggagaaagca 18140362  T
Q  119 atgtcatc 126  Q
    ||||||||    
T  18140363 atgtcatc 18140370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 12712726 - 12712774
Alignment:
Q  63 cacatgtaaatcgtttgagagatttgagaggtaatttggaaagaataga 111  Q
    ||||||| ||||||||||| ||||||||||| | |||||||||||||||    
T  12712726 cacatgtgaatcgtttgagtgatttgagaggcagtttggaaagaataga 12712774  T

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Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 28 - 123
Target Start/End: Complemental strand, 12721570 - 12721475
Alignment:
Q  28 agggttttgaaataaaagagaccatggtttgcatgcacatgtaaatcgtttgagagatttgagaggtaatttggaaagaatagagaaggaaatgtc 123  Q
    ||||||||| ||||||||| |||||| |||     |||| || ||||||||||||||||| || || |||||||| ||||||||||| | ||||||    
T  12721570 agggttttggaataaaagaaaccatgattttttaacacaagtgaatcgtttgagagatttaagcggcaatttggagagaatagagaaagcaatgtc 12721475  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 134
Target Start/End: Complemental strand, 24654688 - 24654573
Alignment:
Q  19 catgaaataagggttttgaaataaaagagaccatggtttgcatgcacatgtaaatcgtttgagagatttgagaggtaatttggaaagaatagagaaggaa 118  Q
    ||||||||||||||| |  |||||||| ||||||| ||| | | ||||   ||| || ||||  ||||| | ||||||||||||||||||||||||||||    
T  24654688 catgaaataagggttatctaataaaagggaccatgatttacgtacacaaccaaaacgcttgaatgattttataggtaatttggaaagaatagagaaggaa 24654589  T
Q  119 atgtcatcaggaatat 134  Q
    |  |||| ||||||||    
T  24654588 agatcattaggaatat 24654573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 91 - 134
Target Start/End: Original strand, 29417741 - 29417784
Alignment:
Q  91 aggtaatttggaaagaatagagaaggaaatgtcatcaggaatat 134  Q
    |||||||||||||||||||||||||||||  |||| ||||||||    
T  29417741 aggtaatttggaaagaatagagaaggaaagatcattaggaatat 29417784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 127
Target Start/End: Complemental strand, 42777202 - 42777095
Alignment:
Q  20 atgaaataagggttttgaaataaaagagaccatggtttgcatgcacatgtaaatcgtttgagagatttgagaggtaatttggaaagaatagagaaggaaa 119  Q
    ||||||| |||||| | |||||| |||||||||| ||||||  |||||  ||||||||||   ||||| | ||||||||| || ||||||||||| | ||    
T  42777202 atgaaattagggttatcaaataagagagaccatgatttgcacacacattcaaatcgtttggttgatttaataggtaattttgagagaatagagaaagcaa 42777103  T
Q  120 tgtcatca 127  Q
    | ||||||    
T  42777102 tatcatca 42777095  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 51869220 - 51869152
Alignment:
Q  19 catgaaataagggttttgaaataaaagagaccatggtttgcatgcacatgtaaatcgtttgagagattt 87  Q
    |||||||| ||||| || |||||| ||||||||||||||| ||||||||  ||||||||| | ||||||    
T  51869220 catgaaatgagggtcttcaaataagagagaccatggtttgtatgcacatccaaatcgtttcaaagattt 51869152  T

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