View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7350_low_32 (Length: 305)
Name: NF7350_low_32
Description: NF7350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7350_low_32 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 20 - 293
Target Start/End: Complemental strand, 12462334 - 12462061
Alignment:
| Q |
20 |
actaggcgcatcagcacaacaaaagtttttgtgattttgttctatgggagtttcaattggtttgcatccaagcattcctgtctcagttaacaaatctaac |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12462334 |
actaggcgcatcagcacaacaaaagtttttgtgattttgttctatgggagtttcaattggtttgcatccaagcattcctgtctcagttaacaaatctaac |
12462235 |
T |
|
| Q |
120 |
acatactttctttgagaaagaaagataccatgcttggacctttcaacttcgatccccaaaaaatactttagatctccaagttgtttcatgtcaaaattag |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12462234 |
acatactttctttgagaaagaaagataccatgcttggaccttgcaacttcgatccccaaaaaatactttagatctccaagttgtttcatgtcaaaattag |
12462135 |
T |
|
| Q |
220 |
aagctaaatatcgctgcaagctcgaaatttcattagcatcatttccagtcacaatcatatcatcaacatatatt |
293 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12462134 |
aagctaaatatcgctgcaagctcgaaatttcattaggatcatttccagtcacaatcatatcatcaacatatatt |
12462061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 214
Target Start/End: Complemental strand, 39744964 - 39744872
Alignment:
| Q |
122 |
atactttctttgagaaagaaagataccatgcttggacctttcaacttcgatccccaaaaaatactttagatctccaagttgtttcatgtcaaa |
214 |
Q |
| |
|
||||||||||||| | ||||| |||||||| || || || | ||||| || ||||||||||| || || | ||||||||||||||| ||||| |
|
|
| T |
39744964 |
atactttctttgacatagaaaaataccatggtttgatctagctacttcaatacccaaaaaatatttgaggtttccaagttgtttcatctcaaa |
39744872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 20 - 293
Target Start/End: Complemental strand, 4245537 - 4245264
Alignment:
| Q |
20 |
actaggcgcatcagcacaacaaaagtttttgtgattttgttctatgggagtttcaattggtttgcatccaagcattcctgtctcagttaacaaatctaac |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4245537 |
actaggcgcatcagcacaacaaaagtttttgtgattttgttctatgggagtttcaattggtttgcatccaagcattcctgtctcagttaacaaatctaac |
4245438 |
T |
|
| Q |
120 |
acatactttctttgagaaagaaagataccatgcttggacctttcaacttcgatccccaaaaaatactttagatctccaagttgtttcatgtcaaaattag |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4245437 |
acatactttctttgagaaagaaagataccatgcttggaccttgcaacttcgatccccaaaaaatactttagatctccaagttgtttcatgtcaaaattag |
4245338 |
T |
|
| Q |
220 |
aagctaaatatcgctgcaagctcgaaatttcattagcatcatttccagtcacaatcatatcatcaacatatatt |
293 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4245337 |
aagctaaatatcgctgcaagctcgaaatttcattaggatcatttccagtcacaatcatatcatcaacatatatt |
4245264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 20 - 293
Target Start/End: Complemental strand, 40091977 - 40091704
Alignment:
| Q |
20 |
actaggcgcatcagcacaacaaaagtttttgtgattttgttctatgggagtttcaattggtttgcatccaagcattcctgtctcagttaacaaatctaac |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40091977 |
actaggcgcatcagcacaacaaaagtttttgtgattttgttctatgggagtttcaattggtttgcatccaagcattcctgtctcagttaacaaatctaac |
40091878 |
T |
|
| Q |
120 |
acatactttctttgagaaagaaagataccatgcttggacctttcaacttcgatccccaaaaaatactttagatctccaagttgtttcatgtcaaaattag |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40091877 |
acatactttctttgagaaagaaagataccatgcttggaccttgcaacttcgatccccaaaaaatactttagatctccaagttgtttcatgtcaaaattag |
40091778 |
T |
|
| Q |
220 |
aagctaaatatcgctgcaagctcgaaatttcattagcatcatttccagtcacaatcatatcatcaacatatatt |
293 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40091777 |
aagctaaatatcgctgcaagctcgaaatttcattaggatcatttccagtcacaatcatatcatcaacatatatt |
40091704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 20 - 293
Target Start/End: Original strand, 8190184 - 8190456
Alignment:
| Q |
20 |
actaggcgcatcagcacaacaaaagtttttgtgattttgttctatgggagtttcaattggtttgcatccaagcattcctgtctcagttaacaaatctaac |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
8190184 |
actaggcgcatcagcacaacaaaagtttttgtgattttgttctatgggagtttcaattggtttgcatccaagcattcctgtctcagttaacgaatctaac |
8190283 |
T |
|
| Q |
120 |
acatactttctttgagaaagaaagataccatgcttggacctttcaacttcgatccccaaaaaatactttagatctccaagttgtttcatgtcaaaattag |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
8190284 |
acatactttctttgagaaagaaagataccatgcttggaccttgcaacttcgatccccaaaaaatactttagatctccaggttgtttcatgtcaaaattag |
8190383 |
T |
|
| Q |
220 |
aagctaaatatcgctgcaagctcgaaatttcattagcatcatttccagtcacaatcatatcatcaacatatatt |
293 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8190384 |
aagctaaatatcgctgcaagctcgaaa-ttcattaggatcatttccagtcacaatcatatcatcaacatatatt |
8190456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 214
Target Start/End: Original strand, 9718173 - 9718265
Alignment:
| Q |
122 |
atactttctttgagaaagaaagataccatgcttggacctttcaacttcgatccccaaaaaatactttagatctccaagttgtttcatgtcaaa |
214 |
Q |
| |
|
||||||||||||| | ||||| |||||||| || || || | ||||| || ||||||||||| || || | ||||||||||||||| ||||| |
|
|
| T |
9718173 |
atactttctttgacatagaaaaataccatggtttgatctagctacttcaatacccaaaaaatatttgaggtttccaagttgtttcatctcaaa |
9718265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 214
Target Start/End: Original strand, 56390495 - 56390587
Alignment:
| Q |
122 |
atactttctttgagaaagaaagataccatgcttggacctttcaacttcgatccccaaaaaatactttagatctccaagttgtttcatgtcaaa |
214 |
Q |
| |
|
||||||||||||| | ||||| |||||||| || || || | ||||| || ||||||||||| || || | ||||||||||||||| ||||| |
|
|
| T |
56390495 |
atactttctttgacatagaaaaataccatggtttgatctagctacttcaatacccaaaaaatatttgaggtttccaagttgtttcatctcaaa |
56390587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University