View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7350_low_33 (Length: 305)
Name: NF7350_low_33
Description: NF7350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7350_low_33 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 305; Significance: 1e-172; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 3094350 - 3094046
Alignment:
| Q |
1 |
ttataatcactatcaacaaccctaccaacttgacaaccaccatgataatgccatatagtcatcacagtgtctctacaaaattgttccaaagacattgaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3094350 |
ttataatcactatcaacaaccctaccaacttgacaaccaccatgataatgccatatagtcatcacagtgtctctacaaaattgttccaaagacattgaag |
3094251 |
T |
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| Q |
101 |
tatttgtgtgtttaggcaataaatttactggtgaatttgctgtcatgttaagtagcatagaaactgacatgtttgtgtatttaaatggagaaaatgcctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3094250 |
tatttgtgtgtttaggcaataaatttactggtgaatttgctgtcatgttaagtagcatagaaactgacatgtttgtgtatttaaatggagaaaatgcctt |
3094151 |
T |
|
| Q |
201 |
tgaatctattattttctcaattgtgttcatgccttgtatgcatctttctaagtctcttgggtcttggaagtagttaaatgttaccaaagggttctcattt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3094150 |
tgaatctattattttctcaattgtgttcatgccttgtatgcatctttctaagtctcttgggtcttggaagtagttaaatgttaccaaagggttctcattt |
3094051 |
T |
|
| Q |
301 |
ggatc |
305 |
Q |
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||||| |
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| T |
3094050 |
ggatc |
3094046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 3085504 - 3085200
Alignment:
| Q |
1 |
ttataatcactatcaacaaccctaccaacttgacaaccaccatgataatgccatatagtcatcacagtgtctctacaaaattgttccaaagacattgaag |
100 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3085504 |
ttataatcattatcaacaaccctaccaacttgacaaccaccatgataatgccatattgtcatcacagtgtctctacaaaattgttccaaagacattgaag |
3085405 |
T |
|
| Q |
101 |
tatttgtgtgtttaggcaataaatttactggtgaatttgctgtcatgttaagtagcatagaaactgacatgtttgtgtatttaaatggagaaaatgcctt |
200 |
Q |
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|||||||||| |||||||||||||||||| ||| |||||| |||||||||||| |||||||| ||| ||||| ||||| ||||||||| ||| || || |
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| T |
3085404 |
tatttgtgtgcttaggcaataaatttacttgtgcatttgcaatcatgttaagtaacatagaaaatgatatgttattgtatctaaatggagcaaaagcatt |
3085305 |
T |
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| Q |
201 |
tgaatctattattttctcaattgtgttcatgccttgtatgcatctttctaagtctcttgggtcttggaagtagttaaatgttaccaaagggttctcattt |
300 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
3085304 |
tgaatctattattttctcaattgtgcccatgccttgtatgcatcgttccaagtctcttgggtcctggaagtagttaaatgttaccaaagggttatcattt |
3085205 |
T |
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| Q |
301 |
ggatc |
305 |
Q |
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||||| |
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| T |
3085204 |
ggatc |
3085200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 86
Target Start/End: Original strand, 42960045 - 42960094
Alignment:
| Q |
37 |
ccaccatgataatgccatatagtcatcacagtgtctctacaaaattgttc |
86 |
Q |
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| T |
42960045 |
ccaccatgatagtgccaaatagtgatcacagtgtctctacaaaactgttc |
42960094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 404934 - 404890
Alignment:
| Q |
15 |
aacaaccctaccaacttgacaaccaccatgataatgccatatagt |
59 |
Q |
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||||||||||||||| ||| ||||||||||||||||||||||| |
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| T |
404934 |
aacaaccctaccaacaacacatccaccatgataatgccatatagt |
404890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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