View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7350_low_4 (Length: 643)
Name: NF7350_low_4
Description: NF7350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7350_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 570; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 570; E-Value: 0
Query Start/End: Original strand, 18 - 631
Target Start/End: Complemental strand, 46906008 - 46905394
Alignment:
| Q |
18 |
taactaaaaatgtcacattgcacattgatctcacatcaatgccagctcactgtatggactaatttgcctgtgaaattcaggccatcttaggaacaaataa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46906008 |
taactaaaaatgtcacattgcacattgatctcacatcaatgccagctcactgtatggactaatttgcctgtgaaattcaggccatcttaggaacaaataa |
46905909 |
T |
|
| Q |
118 |
ttgcaactgtgtaggaattaattgatgacaaattagtctatgagatctatatcttataggcaaagtgagatcgacacggaggaatagcatatttagttag |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46905908 |
ttgcaactgtgtaggaattaattgatgacaaattagtctacgagatctatatcttataggcaaagtgagatcgacacggaggaatagcatatttagttag |
46905809 |
T |
|
| Q |
218 |
catatcacatcaaagtgtctagtggtaaaag-taacagaaatactattttgccaacacttcaccacaattttactgatgtattttctaatccacaaaaat |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
46905808 |
catatcacatcaaagtgtctagtggtaaaagttaacagaaatactattttgccaacacttcaccacaattttactgatgtatattctaatccacaaaaat |
46905709 |
T |
|
| Q |
317 |
catggactattcggactaatgcttacagtttcaaggactaatttgtcgatttactcatttcataaaaaactaatatttaacaccaagataagtagataac |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46905708 |
catggactattcggactaatgcttacagtttcaaggactaatttgtcgatttactcatttcataaaaaactaatatttaacaccaagataagtagataac |
46905609 |
T |
|
| Q |
417 |
tnnnnnnncactacttcaaagtttgatttatcatgttagcaagataactaacttacattaccagcaatagccaagttttccattgctttcaaatcctccc |
516 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
46905608 |
taaaaaaacactacttcaaagtttgatttatcatgttagcaagataactaacttacattaccagcaatagtcaagttttccattgctttcaaatcctccc |
46905509 |
T |
|
| Q |
517 |
aatcagtggccaccatgagagtccggagctccacaaaactcaactccatctccttgtcagtacccaattcaggtaccttatcagaaacatcgatagccca |
616 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46905508 |
aatcagtggccaccatgagagtccggagctctacaaaactcaactccatctccttgtcagtacccaattcaggtaccttatcagaaacatcgatagccca |
46905409 |
T |
|
| Q |
617 |
gtaaacgttatcttc |
631 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
46905408 |
gtaaacgttatcttc |
46905394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 99
Target Start/End: Complemental strand, 30947278 - 30947199
Alignment:
| Q |
18 |
taactaaaaatgtcacattgcacattgatctcacatcaatgccagctcactgtatggactaatttgcctgtgaaattcaggc |
99 |
Q |
| |
|
|||||||| |||||||||| || ||||||||| |||||||| |||||||| | |||||||||| ||||||||||| |||| |
|
|
| T |
30947278 |
taactaaacatgtcacattacatattgatctcgcatcaatgttagctcact--agggactaatttccctgtgaaatttaggc |
30947199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 335 - 375
Target Start/End: Original strand, 31586484 - 31586524
Alignment:
| Q |
335 |
atgcttacagtttcaaggactaatttgtcgatttactcatt |
375 |
Q |
| |
|
||||||| | ||||||||||||||||||| ||||||||||| |
|
|
| T |
31586484 |
atgcttaaaatttcaaggactaatttgtctatttactcatt |
31586524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 27 - 65
Target Start/End: Complemental strand, 36222329 - 36222291
Alignment:
| Q |
27 |
atgtcacattgcacattgatctcacatcaatgccagctc |
65 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
36222329 |
atgtcacattacacattgatcacacatcaatgccagctc |
36222291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University