View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7350_low_40 (Length: 267)

Name: NF7350_low_40
Description: NF7350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7350_low_40
NF7350_low_40
[»] chr6 (3 HSPs)
chr6 (43-252)||(1535161-1535371)
chr6 (71-120)||(31030643-31030692)
chr6 (51-116)||(31261789-31261854)
[»] chr1 (7 HSPs)
chr1 (66-116)||(3528485-3528535)
chr1 (66-111)||(13401597-13401642)
chr1 (40-116)||(32998887-32998963)
chr1 (66-116)||(36371056-36371106)
chr1 (43-116)||(3693789-3693862)
chr1 (51-112)||(4806796-4806857)
chr1 (66-114)||(42267197-42267245)
[»] chr4 (10 HSPs)
chr4 (50-110)||(34942411-34942471)
chr4 (52-99)||(52936653-52936700)
chr4 (41-99)||(35305248-35305306)
chr4 (66-99)||(12145038-12145071)
chr4 (41-114)||(18903749-18903822)
chr4 (66-111)||(27655731-27655776)
chr4 (71-120)||(45970728-45970777)
chr4 (68-116)||(2999682-2999730)
chr4 (43-87)||(35050535-35050579)
chr4 (66-114)||(54500566-54500614)
[»] chr7 (6 HSPs)
chr7 (40-119)||(2622317-2622396)
chr7 (66-125)||(43539120-43539179)
chr7 (68-99)||(46732079-46732110)
chr7 (50-114)||(27279403-27279467)
chr7 (72-116)||(35523102-35523146)
chr7 (41-113)||(42435389-42435461)
[»] chr2 (7 HSPs)
chr2 (41-116)||(29896285-29896360)
chr2 (66-112)||(12893260-12893306)
chr2 (67-105)||(45256155-45256193)
chr2 (71-116)||(2783002-2783047)
chr2 (41-118)||(38904054-38904131)
chr2 (71-119)||(13490717-13490765)
chr2 (66-114)||(31166123-31166171)
[»] chr8 (9 HSPs)
chr8 (71-116)||(32223900-32223945)
chr8 (66-114)||(18422469-18422517)
chr8 (66-116)||(31085880-31085930)
chr8 (69-110)||(39703327-39703368)
chr8 (71-116)||(42200683-42200728)
chr8 (74-110)||(7957796-7957832)
chr8 (40-116)||(11708981-11709057)
chr8 (68-120)||(11754244-11754296)
chr8 (66-118)||(28084275-28084327)
[»] chr5 (6 HSPs)
chr5 (66-114)||(17151858-17151906)
chr5 (66-110)||(29962359-29962403)
chr5 (66-110)||(30012395-30012439)
chr5 (41-116)||(28344549-28344624)
chr5 (67-99)||(7671243-7671275)
chr5 (72-116)||(28391653-28391697)
[»] chr3 (2 HSPs)
chr3 (66-116)||(33223863-33223913)
chr3 (66-118)||(25289329-25289381)


Alignment Details
Target: chr6 (Bit Score: 151; Significance: 6e-80; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 43 - 252
Target Start/End: Complemental strand, 1535371 - 1535161
Alignment:
Q  43 gtggtcagggtttgaactttaatccttacatatattatacattgtttctatcaactgcactaagctcacgaggataaagtatacctttttatgagagtga 142  Q
    ||||| ||||||| ||||| ||||||| |||||||||| ||||||| |||||||||| |||||||| | |||||||||||| ||||||||||||||||||    
T  1535371 gtggttagggtttaaacttcaatccttgcatatattatgcattgttcctatcaactgaactaagcttatgaggataaagtagacctttttatgagagtga 1535272  T
Q  143 gtatctccc-ttatgtaagtttacctaaaaatttaaaggaaaaattccatatattaaagatacaaaatcctctcgttattttcacacagctcaaaattga 241  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||    
T  1535271 gtatctccccttatgtaagtttacctaaaaatttaaaggaaaaattccatatattaaaggtacaaaatcttctcgttattttcacatagctcaaaattga 1535172  T
Q  242 gccaataattt 252  Q
    |||||||||||    
T  1535171 gccaataattt 1535161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 71 - 120
Target Start/End: Original strand, 31030643 - 31030692
Alignment:
Q  71 catatattatacattgtttctatcaactgcactaagctcacgaggataaa 120  Q
    ||||||||||  ||||||||||||||||| | |||||| |||||||||||    
T  31030643 catatattatgtattgtttctatcaactgaagtaagcttacgaggataaa 31030692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 51 - 116
Target Start/End: Complemental strand, 31261854 - 31261789
Alignment:
Q  51 ggtttgaactttaatccttacatatattatacattgtttctatcaactgcactaagctcacgagga 116  Q
    ||||||||| || | ||| |||| |||||| |||||||||||| ||||||||||| |||| |||||    
T  31261854 ggtttgaaccttgaacctcacatctattatgcattgtttctattaactgcactaaactcatgagga 31261789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 116
Target Start/End: Original strand, 3528485 - 3528535
Alignment:
Q  66 ccttacatatattatacattgtttctatcaactgcactaagctcacgagga 116  Q
    ||||||||||||||||||||||||||||||||||  |||| ||||||||||    
T  3528485 ccttacatatattatacattgtttctatcaactgagctaaactcacgagga 3528535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 111
Target Start/End: Complemental strand, 13401642 - 13401597
Alignment:
Q  66 ccttacatatattatacattgtttctatcaactgcactaagctcac 111  Q
    ||||||||||||||| |||||| ||||||||||| |||||||||||    
T  13401642 ccttacatatattatgcattgtctctatcaactgaactaagctcac 13401597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 116
Target Start/End: Original strand, 32998887 - 32998963
Alignment:
Q  40 atggtggtcagggtttgaactttaatccttacatatattatacattgtttctatcaactgcactaagctcacgagga 116  Q
    ||||||| ||||||| ||||| ||| |||| ||| |||||||||||||| ||| ||| || | ||||||||||||||    
T  32998887 atggtggccagggttcgaactgtaaaccttgcatgtattatacattgttcctaccaattgaaataagctcacgagga 32998963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 116
Target Start/End: Original strand, 36371056 - 36371106
Alignment:
Q  66 ccttacatatattatacattgtttctatcaactgcactaagctcacgagga 116  Q
    ||||||||||||||| |||||| |||| ||||||  |||||||||||||||    
T  36371056 ccttacatatattatgcattgtctctaccaactgagctaagctcacgagga 36371106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 116
Target Start/End: Original strand, 3693789 - 3693862
Alignment:
Q  43 gtggtcagggtttgaactttaatccttacatatattatacattgtttctatcaactgcactaagctcacgagga 116  Q
    |||||| |||||||||| | |  ||||||||||||||| | |||| | |||||||||  |||||||||||||||    
T  3693789 gtggtcggggtttgaacctcagaccttacatatattatgctttgtctatatcaactgagctaagctcacgagga 3693862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 51 - 112
Target Start/End: Original strand, 4806796 - 4806857
Alignment:
Q  51 ggtttgaactttaatccttacatatattatacattgtttctatcaactgcactaagctcacg 112  Q
    ||||||||| | || |||||||||||||||||||||| |||| |||||| | |||| |||||    
T  4806796 ggtttgaacctcaaaccttacatatattatacattgtctctaccaactgaattaagttcacg 4806857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 114
Target Start/End: Complemental strand, 42267245 - 42267197
Alignment:
Q  66 ccttacatatattatacattgtttctatcaactgcactaagctcacgag 114  Q
    ||||||||||||||||  |||| |||| |||||| ||||||||||||||    
T  42267245 ccttacatatattatatgttgtctctaccaactgaactaagctcacgag 42267197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 50 - 110
Target Start/End: Original strand, 34942411 - 34942471
Alignment:
Q  50 gggtttgaactttaatccttacatatattatacattgtttctatcaactgcactaagctca 110  Q
    ||||||||| | ||| |||||||||||||||||||||| |||| |||||| ||||||||||    
T  34942411 gggtttgaaatctaaaccttacatatattatacattgtctctaccaactgaactaagctca 34942471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 99
Target Start/End: Complemental strand, 52936700 - 52936653
Alignment:
Q  52 gtttgaactttaatccttacatatattatacattgtttctatcaactg 99  Q
    |||||||| | || ||||||||||||||||||||||||||||||||||    
T  52936700 gtttgaacctcaaaccttacatatattatacattgtttctatcaactg 52936653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 99
Target Start/End: Complemental strand, 35305306 - 35305248
Alignment:
Q  41 tggtggtcagggtttgaactttaatccttacatatattatacattgtttctatcaactg 99  Q
    |||||||| |||||||||||| || |||| |||||||| | |||| |||||||||||||    
T  35305306 tggtggtcggggtttgaacttcaaaccttgcatatattgtgcattatttctatcaactg 35305248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 66 - 99
Target Start/End: Original strand, 12145038 - 12145071
Alignment:
Q  66 ccttacatatattatacattgtttctatcaactg 99  Q
    |||||||||||||||||||||| |||||||||||    
T  12145038 ccttacatatattatacattgtctctatcaactg 12145071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 41 - 114
Target Start/End: Original strand, 18903749 - 18903822
Alignment:
Q  41 tggtggtcagggtttgaactttaatccttacatatattatacattgtttctatcaactgcactaagctcacgag 114  Q
    |||||||||||||||||||   |  ||||||||||||||| |||| ||| |||||||||  |||| ||||||||    
T  18903749 tggtggtcagggtttgaaccccagaccttacatatattatgcattatttttatcaactgagctaaactcacgag 18903822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 66 - 111
Target Start/End: Complemental strand, 27655776 - 27655731
Alignment:
Q  66 ccttacatatattatacattgtttctatcaactgcactaagctcac 111  Q
    |||| |||||||||| |||||||||||||||||| |||||| ||||    
T  27655776 ccttgcatatattatgcattgtttctatcaactgaactaagttcac 27655731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 71 - 120
Target Start/End: Original strand, 45970728 - 45970777
Alignment:
Q  71 catatattatacattgtttctatcaactgcactaagctcacgaggataaa 120  Q
    |||||||||| ||||||||||| ||||||   ||||||||||||||||||    
T  45970728 catatattatgcattgtttctaccaactgagttaagctcacgaggataaa 45970777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 116
Target Start/End: Original strand, 2999682 - 2999730
Alignment:
Q  68 ttacatatattatacattgtttctatcaactgcactaagctcacgagga 116  Q
    ||||||||||| |||||||||| || |||| | ||||||||||||||||    
T  2999682 ttacatatattgtacattgtttataccaaccgaactaagctcacgagga 2999730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 87
Target Start/End: Original strand, 35050535 - 35050579
Alignment:
Q  43 gtggtcagggtttgaactttaatccttacatatattatacattgt 87  Q
    |||||| |||||||||||| || |||||||||||||||| |||||    
T  35050535 gtggtcggggtttgaacttcaaaccttacatatattataaattgt 35050579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 114
Target Start/End: Complemental strand, 54500614 - 54500566
Alignment:
Q  66 ccttacatatattatacattgtttctatcaactgcactaagctcacgag 114  Q
    ||||||||||||||| |||||| |||| ||||||  |||||||||||||    
T  54500614 ccttacatatattatgcattgtctctaccaactgagctaagctcacgag 54500566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 119
Target Start/End: Complemental strand, 2622396 - 2622317
Alignment:
Q  40 atggtggtcagggtttgaactttaatccttacatatattatacattgtttctatcaactgcactaagctcacgaggataa 119  Q
    ||||||| | ||||||||||| |||  ||||||||||||||  |||||| |||||||||   ||||||||||||||||||    
T  2622396 atggtggccggggtttgaactctaaatcttacatatattatgtattgttcctatcaactaagctaagctcacgaggataa 2622317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 66 - 125
Target Start/End: Original strand, 43539120 - 43539179
Alignment:
Q  66 ccttacatatattatacattgtttctatcaactgcactaagctcacgaggataaagtata 125  Q
    ||||||||||||||| ||||||| ||||||||||  |||||||||| |||| || |||||    
T  43539120 ccttacatatattatgcattgttcctatcaactgagctaagctcacaaggacaaggtata 43539179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 68 - 99
Target Start/End: Complemental strand, 46732110 - 46732079
Alignment:
Q  68 ttacatatattatacattgtttctatcaactg 99  Q
    ||||||||||||||||||||||||||||||||    
T  46732110 ttacatatattatacattgtttctatcaactg 46732079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 114
Target Start/End: Original strand, 27279403 - 27279467
Alignment:
Q  50 gggtttgaactttaatccttacatatattatacattgtttctatcaactgcactaagctcacgag 114  Q
    |||||||||| | || |||||||||||||||||||||| | ||  ||||| |||||| |||||||    
T  27279403 gggtttgaacctcaaaccttacatatattatacattgtctatactaactgaactaagttcacgag 27279467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 116
Target Start/End: Original strand, 35523102 - 35523146
Alignment:
Q  72 atatattatacattgtttctatcaactgcactaagctcacgagga 116  Q
    |||||||||||||||||| ||||||||| | |||||||| |||||    
T  35523102 atatattatacattgtttatatcaactgaattaagctcatgagga 35523146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 113
Target Start/End: Original strand, 42435389 - 42435461
Alignment:
Q  41 tggtggtcagggtttgaactttaatccttacatatattatacattgtttctatcaactgcactaagctcacga 113  Q
    ||||||||||| ||||||| |||  |||| |||||||||| ||| || |||| ||||||  ||||||||||||    
T  42435389 tggtggtcaggatttgaacattagaccttgcatatattatgcatagtctctaccaactgagctaagctcacga 42435461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 116
Target Start/End: Original strand, 29896285 - 29896360
Alignment:
Q  41 tggtggtcagggtttgaactttaatccttacatatattatacattgtttctatcaactgcactaagctcacgagga 116  Q
    |||||||| ||||||||||   || |||| |||||||||| |||||||||||||||||| | ||| ||||||||||    
T  29896285 tggtggtcggggtttgaaccccaaaccttgcatatattatgcattgtttctatcaactgaattaaactcacgagga 29896360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 112
Target Start/End: Original strand, 12893260 - 12893306
Alignment:
Q  66 ccttacatatattatacattgtttctatcaactgcactaagctcacg 112  Q
    |||||||||||||||||||||||  |||||||||  |||||||||||    
T  12893260 ccttacatatattatacattgttcttatcaactgagctaagctcacg 12893306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 105
Target Start/End: Original strand, 45256155 - 45256193
Alignment:
Q  67 cttacatatattatacattgtttctatcaactgcactaa 105  Q
    ||||||||||||||||||| |||||||||||||| ||||    
T  45256155 cttacatatattatacattctttctatcaactgcgctaa 45256193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 71 - 116
Target Start/End: Complemental strand, 2783047 - 2783002
Alignment:
Q  71 catatattatacattgtttctatcaactgcactaagctcacgagga 116  Q
    ||||||||||||||| | |||| |||||| ||||||||||||||||    
T  2783047 catatattatacattatctctaccaactgaactaagctcacgagga 2783002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 41 - 118
Target Start/End: Complemental strand, 38904131 - 38904054
Alignment:
Q  41 tggtggtcagggtttgaactttaatccttacatatattatacattgtttctatcaactgcactaagctcacgaggata 118  Q
    ||||||| |||||||||||  | | |||| |||||||||| |||||| ||||||||  |  |||||||||||||||||    
T  38904131 tggtggttagggtttgaaccctgaaccttgcatatattatgcattgtatctatcaatcgagctaagctcacgaggata 38904054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 13490765 - 13490717
Alignment:
Q  71 catatattatacattgtttctatcaactgcactaagctcacgaggataa 119  Q
    ||||||||||||||||| |||||||||||  |||| ||||||| |||||    
T  13490765 catatattatacattgtctctatcaactgagctaaactcacgaagataa 13490717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 114
Target Start/End: Original strand, 31166123 - 31166171
Alignment:
Q  66 ccttacatatattatacattgtttctatcaactgcactaagctcacgag 114  Q
    |||||||||||||||||||| | ||||||||||| | |||| |||||||    
T  31166123 ccttacatatattatacattatctctatcaactgaattaagttcacgag 31166171  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 71 - 116
Target Start/End: Original strand, 32223900 - 32223945
Alignment:
Q  71 catatattatacattgtttctatcaactgcactaagctcacgagga 116  Q
    |||||||||| |||||| ||||||||||| ||||||||||||||||    
T  32223900 catatattatgcattgtctctatcaactgaactaagctcacgagga 32223945  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 114
Target Start/End: Original strand, 18422469 - 18422517
Alignment:
Q  66 ccttacatatattatacattgtttctatcaactgcactaagctcacgag 114  Q
    ||||||||||||||| |||||||||||||||||| | |||||| |||||    
T  18422469 ccttacatatattatgcattgtttctatcaactgaattaagcttacgag 18422517  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 116
Target Start/End: Original strand, 31085880 - 31085930
Alignment:
Q  66 ccttacatatattatacattgtttctatcaactgcactaagctcacgagga 116  Q
    ||||||||| |||||||||||||  |||||||||  |||||||||||||||    
T  31085880 ccttacatacattatacattgttcatatcaactgagctaagctcacgagga 31085930  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 69 - 110
Target Start/End: Original strand, 39703327 - 39703368
Alignment:
Q  69 tacatatattatacattgtttctatcaactgcactaagctca 110  Q
    ||||||||||||||| ||||||||||||||| ||||| ||||    
T  39703327 tacatatattatacaatgtttctatcaactgaactaaactca 39703368  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 71 - 116
Target Start/End: Original strand, 42200683 - 42200728
Alignment:
Q  71 catatattatacattgtttctatcaactgcactaagctcacgagga 116  Q
    |||||||||||||||||  ||||||||||  |||||||||||||||    
T  42200683 catatattatacattgtccctatcaactgagctaagctcacgagga 42200728  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 110
Target Start/End: Complemental strand, 7957832 - 7957796
Alignment:
Q  74 atattatacattgtttctatcaactgcactaagctca 110  Q
    |||||||||| ||||||||||||||| ||||||||||    
T  7957832 atattatacagtgtttctatcaactgaactaagctca 7957796  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 116
Target Start/End: Complemental strand, 11709057 - 11708981
Alignment:
Q  40 atggtggtcagggtttgaactttaatccttacatatattatacattgtttctatcaactgcactaagctcacgagga 116  Q
    ||||||||| ||||||||||||    |||| |||||||||| ||||||  ||| ||||||  |||||||||||||||    
T  11709057 atggtggtcggggtttgaacttcggaccttgcatatattatgcattgtccctaccaactgagctaagctcacgagga 11708981  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 120
Target Start/End: Complemental strand, 11754296 - 11754244
Alignment:
Q  68 ttacatatattatacattgtttctatcaactgcactaagctcacgaggataaa 120  Q
    |||||||||||||||||||||||||  |||||  ||||| |||||| ||||||    
T  11754296 ttacatatattatacattgtttctactaactgagctaagatcacgaagataaa 11754244  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 118
Target Start/End: Complemental strand, 28084327 - 28084275
Alignment:
Q  66 ccttacatatattatacattgtttctatcaactgcactaagctcacgaggata 118  Q
    |||| |||||||||| |||||| |||||||||||   ||||||||||||||||    
T  28084327 ccttgcatatattattcattgtctctatcaactgagttaagctcacgaggata 28084275  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 114
Target Start/End: Original strand, 17151858 - 17151906
Alignment:
Q  66 ccttacatatattatacattgtttctatcaactgcactaagctcacgag 114  Q
    |||| ||||||||||||||||| |||| |||||| ||||||||||||||    
T  17151858 ccttgcatatattatacattgtctctagcaactgaactaagctcacgag 17151906  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 110
Target Start/End: Complemental strand, 29962403 - 29962359
Alignment:
Q  66 ccttacatatattatacattgtttctatcaactgcactaagctca 110  Q
    |||| |||||||||||||||||||||||||||||  |||||||||    
T  29962403 ccttgcatatattatacattgtttctatcaactgagctaagctca 29962359  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 110
Target Start/End: Original strand, 30012395 - 30012439
Alignment:
Q  66 ccttacatatattatacattgtttctatcaactgcactaagctca 110  Q
    |||| |||||||||||||||||||||||||||||  |||||||||    
T  30012395 ccttgcatatattatacattgtttctatcaactgagctaagctca 30012439  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 41 - 116
Target Start/End: Complemental strand, 28344624 - 28344549
Alignment:
Q  41 tggtggtcagggtttgaactttaatccttacatatattatacattgtttctatcaactgcactaagctcacgagga 116  Q
    ||||||||| |||||||||   || |||| |||||||||||||||||  || ||||||| |||||||| |||||||    
T  28344624 tggtggtcaaggtttgaaccccaaaccttgcatatattatacattgtccctttcaactgaactaagcttacgagga 28344549  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 99
Target Start/End: Complemental strand, 7671275 - 7671243
Alignment:
Q  67 cttacatatattatacattgtttctatcaactg 99  Q
    ||||||||| |||||||||||||||||||||||    
T  7671275 cttacatatcttatacattgtttctatcaactg 7671243  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 116
Target Start/End: Original strand, 28391653 - 28391697
Alignment:
Q  72 atatattatacattgtttctatcaactgcactaagctcacgagga 116  Q
    |||||||||||||| |||||||||||||  |||| ||||||||||    
T  28391653 atatattatacattatttctatcaactgagctaaactcacgagga 28391697  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 116
Target Start/End: Complemental strand, 33223913 - 33223863
Alignment:
Q  66 ccttacatatattatacattgtttctatcaactgcactaagctcacgagga 116  Q
    |||| |||||||||| ||||||||||| ||||||  |||||||||||||||    
T  33223913 ccttgcatatattatgcattgtttctaccaactgagctaagctcacgagga 33223863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 118
Target Start/End: Original strand, 25289329 - 25289381
Alignment:
Q  66 ccttacatatattatacattgtttctatcaactgcactaagctcacgaggata 118  Q
    |||||||||||||||||||||||| || ||||||  ||||| |||| ||||||    
T  25289329 ccttacatatattatacattgtttttaccaactgagctaagttcacaaggata 25289381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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