View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7350_low_41 (Length: 266)
Name: NF7350_low_41
Description: NF7350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7350_low_41 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
| [»] chr7 (3 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 41 - 266
Target Start/End: Complemental strand, 46527938 - 46527713
Alignment:
| Q |
41 |
cttgtgttaaggacgaatcaagtggttgaactcaagtggttaatgagcttcagttaatgttcgggagaaccatacttcgaaacctaactgaaacaattaa |
140 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46527938 |
cttgtgttaaggacgaatcaagtggttgaactcaagtggttaatgagcttcagttaatgttcgggagaaccatacttcgaaacctaactgaaacaattaa |
46527839 |
T |
|
| Q |
141 |
cggttagactttacttatcgtccgaactttggattattaaagacatttcccattnnnnnnngaggaagatatggtagaagtctcaccaacattaagtgat |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||| |
|
|
| T |
46527838 |
cggttagactttacttatcgtccgaactttggattattaaagacatttcccattaaaaaaatatgaagatatggtagaagtctcaccaacattaagcgat |
46527739 |
T |
|
| Q |
241 |
aatcccatctgagtaggccttatact |
266 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
46527738 |
aatcccatctgagtaggccttatact |
46527713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 97
Target Start/End: Complemental strand, 40804462 - 40804424
Alignment:
| Q |
59 |
caagtggttgaactcaagtggttaatgagcttcagttaa |
97 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
40804462 |
caagtggttgaattcaagtggttaatgagcttctgttaa |
40804424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 205 - 266
Target Start/End: Original strand, 43030634 - 43030695
Alignment:
| Q |
205 |
gaagatatggtagaagtctcaccaacattaagtgataatcccatctgagtaggccttatact |
266 |
Q |
| |
|
||||||||||||||| |||||||||||| | |||| |||||||||||||||||||||||||| |
|
|
| T |
43030634 |
gaagatatggtagaattctcaccaacatcatgtgacaatcccatctgagtaggccttatact |
43030695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 116 - 182
Target Start/End: Original strand, 43030513 - 43030579
Alignment:
| Q |
116 |
ttcgaaacctaactgaaacaattaacggttagactttacttatcgtccgaactttggattattaaag |
182 |
Q |
| |
|
|||||||| | ||||||||||||| ||||||||||||||||||| || ||||||||||||| |||| |
|
|
| T |
43030513 |
ttcgaaacttgactgaaacaattattggttagactttacttatcggcctaactttggattatcaaag |
43030579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 43030423 - 43030459
Alignment:
| Q |
17 |
tagaagagaaacaaagatatgcatcttgtgttaagga |
53 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
43030423 |
tagaagaaaaacaaagaaatgcatcttgtgttaagga |
43030459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 92
Target Start/End: Complemental strand, 8141923 - 8141890
Alignment:
| Q |
59 |
caagtggttgaactcaagtggttaatgagcttca |
92 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| |
|
|
| T |
8141923 |
caagtggttgagctcaagtggttaatgagcttca |
8141890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University