View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7350_low_47 (Length: 250)
Name: NF7350_low_47
Description: NF7350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7350_low_47 |
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Alignment Details
Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 32055463 - 32055225
Alignment:
| Q |
1 |
taggatcccataaaaatttcaaagggaggttaagaaaaaccctttggaaaataatgaatgttattgtaatttgtttggattttcatgtaacatatataag |
100 |
Q |
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| T |
32055463 |
taggatcccataaaaatttcaaagggaggttaagaaaaactctttggaaaataatg----ttattgtaatttgtttggattttcatgtaacatatataag |
32055368 |
T |
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| Q |
101 |
gctgggacacttttaaatttgcatacacattgtgcgtcaagtggtcaagtattcattatcgtggattatctaatacaattttatcttgtattatcatgtt |
200 |
Q |
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|| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||| |
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| T |
32055367 |
gccgggacccttttaaatttgcatacacattgtgcgtcaagtggtcaagtattcattaacgtggattatctaatacaattttattttgtattattatgtt |
32055268 |
T |
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| Q |
201 |
ttgtttgtatttactccaaaacgatcaatgtgtcttcttctca |
243 |
Q |
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||||||||||||| |||||||||||||||||||||||||||| |
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| T |
32055267 |
ttgtttgtatttatcccaaaacgatcaatgtgtcttcttctca |
32055225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 210
Target Start/End: Complemental strand, 20996439 - 20996249
Alignment:
| Q |
7 |
cccataaaaatttcaaagggaggttaagaaaaaccctttggaaaataatgaatgttattgtaatttgtttggattttcatgtaacatatataaggctggg |
106 |
Q |
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| T |
20996439 |
cccataaaaactggaaagggaggttaagaaaaacactttgtaagataacg----ttattgtaatttgtttgtatttttatgtaacatatctaagactagg |
20996344 |
T |
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| Q |
107 |
acacttttaaatttgcatacacattgtgcgtcaagtggtcaagtattcattatcgtggattatctaatacaattttatcttgtattatcatgttttgttt |
206 |
Q |
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| T |
20996343 |
actcctttgaatttgaaga-acattg-----ca---ggaaatgtattcattaatgtggattatgcaatacaattttatattttattatcatgttttgttt |
20996253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 7 - 192
Target Start/End: Complemental strand, 8086110 - 8085937
Alignment:
| Q |
7 |
cccataaaaatttcaaagggaggttaagaaaaaccctttggaaaataatgaatgttattgtaatttgtttggattttcatgtaacatatataaggctggg |
106 |
Q |
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||||||||||||| ||||||||| ||||||| || | |||||||| |||||||| ||||||||||||||||||||||||||||| |||| || || |
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| T |
8086110 |
cccataaaaatttgaaagggaggataagaaatacattctggaaaat----gatgttattctaatttgtttggattttcatgtaacatatgtaagactagg |
8086015 |
T |
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| Q |
107 |
acacttttaaatttgcatacacattgtgcgtcaagtggtcaagtattcattatcgtggattatctaatacaattttatcttgtatt |
192 |
Q |
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| T |
8086014 |
atccttttaaatttgcatatacattg-----ca---tgtaaattattcattaatgtggattatctaatataattttatcttgtatt |
8085937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 58 - 132
Target Start/End: Original strand, 30333144 - 30333218
Alignment:
| Q |
58 |
atgttattgtaatttgtttggattttcatgtaacatatataaggctgggacacttttaaatttgcatacacattg |
132 |
Q |
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| T |
30333144 |
atgttattgtaatttgtttggattttcatgtaacatatttaagactaggacccttataaattatcatacacattg |
30333218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 164 - 215
Target Start/End: Complemental strand, 7580976 - 7580925
Alignment:
| Q |
164 |
gattatctaatacaattttatcttgtattatcatgttttgtttgtatttact |
215 |
Q |
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| T |
7580976 |
gattatctaatacgattttatcttatgttatcatgttttgtttgtatttact |
7580925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 161 - 213
Target Start/End: Original strand, 26511481 - 26511533
Alignment:
| Q |
161 |
gtggattatctaatacaattttatcttgtattatcatgttttgtttgtattta |
213 |
Q |
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| T |
26511481 |
gtggattatattattcaattttatcttgtattatcatgttttggttgtattta |
26511533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 26511362 - 26511427
Alignment:
| Q |
8 |
ccataaaaatttcaaagggaggttaagaaaaaccctttggaaaataatgaatgttattgtaatttgt |
74 |
Q |
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|||||||||||| |||| ||||||||||||||| || |||| | |||| ||||||||||||||||| |
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| T |
26511362 |
ccataaaaatttgaaagagaggttaagaaaaacactatggatgaaaatg-atgttattgtaatttgt |
26511427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 202
Target Start/End: Original strand, 19828221 - 19828276
Alignment:
| Q |
150 |
tattcattatcgtggattatctaatac---aattttatcttgtattatcatgtttt |
202 |
Q |
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||||||||| |||||||||||||||| |||||||||||||||||||||||||| |
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| T |
19828221 |
tattcattaatgtggattatctaatactacaattttatcttgtattatcatgtttt |
19828276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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