View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7350_low_49 (Length: 247)
Name: NF7350_low_49
Description: NF7350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7350_low_49 |
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Alignment Details
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 32055655 - 32055887
Alignment:
| Q |
1 |
aaaaaatgaaaactaaataaaataggaagcatatcaaagccacatctccttgcgtgaaatattatttcagtgcctaaaccctctacaggtcagtaatgcc |
100 |
Q |
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| T |
32055655 |
aaaaaatgaaaactaaataaaataggaagcatatcaaagccacatctccttgcgtgaaatattatttcagtgcctaaaccctctacaggtcagtaatgcc |
32055754 |
T |
|
| Q |
101 |
tttatattttgtgtgactatcaataaccagacccgttcttga-ggggtgcaaacagttcaatcgaattggaccatcaataacaatacccaccccataatc |
199 |
Q |
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| T |
32055755 |
tctatattttgtgcgactatcaataaccagatccgttcttgagggggtgcaaacagttcaaccgaattggaccatcaataacaatacccaccccacaatc |
32055854 |
T |
|
| Q |
200 |
aaagggaaaaaacatgctcttgtttcttctttc |
232 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
32055855 |
aaagggaaaaaacatgctcttgtttcttctttc |
32055887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 8086339 - 8086464
Alignment:
| Q |
1 |
aaaaaatgaaaactaaataaaataggaagcatatcaaagccacatctccttgcgtgaaatattatttcagtgcctaaaccctctacaggtcagtaatgcc |
100 |
Q |
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|||||||| |||||||| ||| |||| |||||||||| | ||||||||||||| || ||||||||| || ||||||| |||||||| ||||| | | || |
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| T |
8086339 |
aaaaaatggaaactaaaaaaattagggagcatatcaacgtcacatctccttgcttggaatattattacaacgcctaaatcctctacatgtcagcatttcc |
8086438 |
T |
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| Q |
101 |
tttatattttgtgtgactatcaataa |
126 |
Q |
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| T |
8086439 |
tttatattttgtgtgcccatcaataa |
8086464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 116
Target Start/End: Complemental strand, 30332820 - 30332735
Alignment:
| Q |
31 |
atatcaaagccacatctccttgcgtgaaatattatttcagtgcctaaaccctctacaggtcagtaatgcctttatattttgtgtga |
116 |
Q |
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|||||||||||| ||||| |||| |||||||| ||| |||| ||||| ||| |||| || || | ||||||| |||||||||||| |
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| T |
30332820 |
atatcaaagccatatctcgttgcttgaaatatcattagagtgtctaaatcctttacatgtgagcattgcctttttattttgtgtga |
30332735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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