View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7350_low_5 (Length: 638)
Name: NF7350_low_5
Description: NF7350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7350_low_5 |
 | |
|
| [»] scaffold0074 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 592; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 592; E-Value: 0
Query Start/End: Original strand, 1 - 604
Target Start/End: Complemental strand, 9440509 - 9439906
Alignment:
| Q |
1 |
aacctcaggtgttgcggtatgtttcggaggatcagagttaactgtcaggggttatgttgattcagattttgcaggtgatcatgataaaagaaaatctact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9440509 |
aacctcaggtgttgcggtatgtttcggaggatcagagttaactgtcaggggttatgttgattcagattttgcaggtgatcatgataaaagaaaatctact |
9440410 |
T |
|
| Q |
101 |
actggttatgtgttcacgcttgcaggaggagcagtaagttggttgtccaagttacaaacggttgtagctctgtcaacgacagaagcggagtacatggcag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9440409 |
actggttatgtgttcacgcttgcaggaggagcagtaagttggttgtccaagttacaaacggttgtagctctgtcaacgacagaagcggagtacatggcag |
9440310 |
T |
|
| Q |
201 |
ctactcaagcatgcaaggaagctatttggatgcaaaggttaatggaggaactcgggcacaagcaggaacaaattactgtgtattgtgatagtcagagtgc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
9440309 |
ctactcaagcatgcaaggaagctatttggatgcaaaggttaatggaggaactcgggcacaagcaggaacaaattactgtgtattgtgacagtcagagtgc |
9440210 |
T |
|
| Q |
301 |
cttgcacattgcaaggaatccagcttttcattcaaggacgaaacacataggcgttcaatatcattttgttcgcgaagtagtagaggaaggaagcgtggat |
400 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9440209 |
cttgcatattgcaaggaatccagcttttcattcaaggacgaaacacataggcattcaatatcattttgttcgcgaagtagtagaggaaggaagcgtggat |
9440110 |
T |
|
| Q |
401 |
atgcagaagattcacactaatgataacctagcagatgcaatgacaaagtcgatcaacactgacaagtttatatggtgtcgatcttcgtatggcctattgg |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9440109 |
atgcagaagattcacactaatgataacctagcagatgcaatgacaaagtcgatcaacactgacaagtttatatggtgtcgatcttcgtatggcctattgg |
9440010 |
T |
|
| Q |
501 |
aaacgtagcaactggagttggcaaggtagagagactttgaatactcacaaaagtgactttaagtgggagattgtgaacatgtgtgaacaagtaaagccac |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9440009 |
aaacgtagcaactggagttggcaaggtagagagactttgaatactcacaaaagtgactttaagtgggagattgtgaacatgtgtgaacaagtaaagccac |
9439910 |
T |
|
| Q |
601 |
attt |
604 |
Q |
| |
|
|||| |
|
|
| T |
9439909 |
attt |
9439906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 483
Target Start/End: Complemental strand, 24594909 - 24594427
Alignment:
| Q |
1 |
aacctcaggtgttgcggtatgtttcggaggatcagagttaactgtcaggggttatgttgattcagattttgcaggtgatcatgataaaagaaaatctact |
100 |
Q |
| |
|
||||| || |||||| |||||||| |||||| || || | ||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
24594909 |
aaccttagatgttgcattatgtttcagaggattggaatttattgtcaaaggttatgttgattcagattttgcaggtgatcttgataaaagaagatctact |
24594810 |
T |
|
| Q |
101 |
actggttatgtgttcacgcttgcaggaggagcagtaagttggttgtccaagttacaaacggttgtagctctgtcaacgacagaagcggagtacatggcag |
200 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||||| ||||| || |||||| | || |||||||| || || |||||||| || || ||||||| |
|
|
| T |
24594809 |
actggttatgtgttcacacttgcaggaggagcgataagttgattgtcaaaattacaatctgtcgtagctctatctactacagaagctgaatatatggcag |
24594710 |
T |
|
| Q |
201 |
ctactcaagcatgcaaggaagctatttggatgcaaaggttaatggaggaactcgggcacaagcaggaacaaattactgtgtattgtgatagtcagagtgc |
300 |
Q |
| |
|
|||| ||||| |||||||||||||||||||| ||||| ||||||| |||||||| |||| || |||||||| |||||||||||| ||||||||||| |
|
|
| T |
24594709 |
ctacacaagcttgcaaggaagctatttggatacaaagactaatggaagaactcggccacagtcaacaacaaattgttgtgtattgtgacagtcagagtgc |
24594610 |
T |
|
| Q |
301 |
cttgcacattgcaaggaatccagcttttcattcaaggacgaaacacataggcgttcaatatcattttgttcgcgaagtagtagaggaaggaagcgtggat |
400 |
Q |
| |
|
|||||||||||||||||||||| |||||||| || || ||||||||||| |||||||| ||||||||||| ||||| |||||| |||| || || ||| |
|
|
| T |
24594609 |
attgcacattgcaaggaatccagtctttcattcgagaacaaaacacataggtgttcaataccattttgttcgagaagtggtagagaaagggagtgttgat |
24594510 |
T |
|
| Q |
401 |
atgcagaagattcacactaatgataacctagcagatgcaatgacaaagtcgatcaacactgacaagtttatatggtgtcgatc |
483 |
Q |
| |
|
|||||||| |||||||| || || || ||||||||| ||||||||||| ||||| ||||||| |||| ||||||| |||| |
|
|
| T |
24594509 |
atgcagaaaattcacaccaaagacaatttagcagatgttatgacaaagtcaatcaatgctgacaaatttacatggtgtagatc |
24594427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 545 - 582
Target Start/End: Complemental strand, 24594404 - 24594367
Alignment:
| Q |
545 |
tcacaaaagtgactttaagtgggagattgtgaacatgt |
582 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
24594404 |
tcacaaaagtgactttaagtgggagattgtgaagatgt |
24594367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 572 - 604
Target Start/End: Complemental strand, 9444658 - 9444626
Alignment:
| Q |
572 |
tgtgaacatgtgtgaacaagtaaagccacattt |
604 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
9444658 |
tgtgaacatgtgtgaacaagtaaagccacattt |
9444626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 588; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 588; E-Value: 0
Query Start/End: Original strand, 1 - 604
Target Start/End: Original strand, 42269802 - 42270405
Alignment:
| Q |
1 |
aacctcaggtgttgcggtatgtttcggaggatcagagttaactgtcaggggttatgttgattcagattttgcaggtgatcatgataaaagaaaatctact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42269802 |
aacctcaggtgttgcggtatgtttcggaggatcagagttaactgtcaggggttatgttgattcagattttgcaggtgatcatgataaaagaaaatctact |
42269901 |
T |
|
| Q |
101 |
actggttatgtgttcacgcttgcaggaggagcagtaagttggttgtccaagttacaaacggttgtagctctgtcaacgacagaagcggagtacatggcag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42269902 |
actggttatgtgttcacgcttgcaggaggagcagtaagttggttgtccaagttacaaacggttgtagctctgtcaacgacagaagcggagtacatggcag |
42270001 |
T |
|
| Q |
201 |
ctactcaagcatgcaaggaagctatttggatgcaaaggttaatggaggaactcgggcacaagcaggaacaaattactgtgtattgtgatagtcagagtgc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
42270002 |
ctactcaagcatgcaaggaagctatttggatgcaaaggttaatggaggaactcgggcacaagcaggaacaaattactgtgtattgtgacagtcagagtgc |
42270101 |
T |
|
| Q |
301 |
cttgcacattgcaaggaatccagcttttcattcaaggacgaaacacataggcgttcaatatcattttgttcgcgaagtagtagaggaaggaagcgtggat |
400 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42270102 |
cttgcatattgcaaggaatccagcttttcattcaaggacgaaacacataggcgttcaatatcattttgttcgcgaagtagtagaggaaggaagcgtggat |
42270201 |
T |
|
| Q |
401 |
atgcagaagattcacactaatgataacctagcagatgcaatgacaaagtcgatcaacactgacaagtttatatggtgtcgatcttcgtatggcctattgg |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
42270202 |
atgcagaagattcacactaatgataacctagcagatgcaatgacaaagtcgatcaacactgacaagtttatatggtgtcgatctttgtatggcctattgg |
42270301 |
T |
|
| Q |
501 |
aaacgtagcaactggagttggcaaggtagagagactttgaatactcacaaaagtgactttaagtgggagattgtgaacatgtgtgaacaagtaaagccac |
600 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42270302 |
aaacgtagcaactagagttggcaaggtagagagactttgaatactcacaaaagtgactttaagtgggagattgtgaacatgtgtgaacaagtaaagccac |
42270401 |
T |
|
| Q |
601 |
attt |
604 |
Q |
| |
|
|||| |
|
|
| T |
42270402 |
attt |
42270405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 1 - 579
Target Start/End: Complemental strand, 48698239 - 48697661
Alignment:
| Q |
1 |
aacctcaggtgttgcggtatgtttcggaggatcagagttaactgtcaggggttatgttgattcagattttgcaggtgatcatgataaaagaaaatctact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48698239 |
aacctcaggtgttgcggtatgtttcggaggatcagagttaactgtcaggggttatgttgattcagattttgcaggtgatcatgataaaagaaaatctact |
48698140 |
T |
|
| Q |
101 |
actggttatgtgttcacgcttgcaggaggagcagtaagttggttgtccaagttacaaacggttgtagctctgtcaacgacagaagcggagtacatggcag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48698139 |
actggttatgtgttcacgcttgcaggaggagcagtaagttggttgtccaagttacaaacggttgtagctctgtcaacgacagaagcggagtacatggcag |
48698040 |
T |
|
| Q |
201 |
ctactcaagcatgcaaggaagctatttggatgcaaaggttaatggaggaactcgggcacaagcaggaacaaattactgtgtattgtgatagtcagagtgc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
48698039 |
ctactcaagcatgcaaggaagctatttggatgcaaaggttaatggaggaactcgggcacaagcaggaacaaattactgtgtattgtgacagtcagagtgc |
48697940 |
T |
|
| Q |
301 |
cttgcacattgcaaggaatccagcttttcattcaaggacgaaacacataggcgttcaatatcattttgttcgcgaagtagtagaggaaggaagcgtggat |
400 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
48697939 |
cttgcatattgcaaggaatccagcttttcattcaaggacgaaacacataggcgttcaatatcattttgttcgcgaagtagtagaggagggaagtgtggac |
48697840 |
T |
|
| Q |
401 |
atgcagaagattcacactaatgataacctagcagatgcaatgacaaagtcgatcaacactgacaagtttatatggtgtcgatcttcgtatggcctattgg |
500 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||| |||||||||| |||||||| |||| |||||| ||||||||||||| |||||||||||||||| |
|
|
| T |
48697839 |
atgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaacgctgataagtttgtatggtgtcgatcctcgtatggcctattgg |
48697740 |
T |
|
| Q |
501 |
aaacgtagcaactggagttggcaaggtagagagactttgaatactcacaaaagtgactttaagtgggagattgtgaaca |
579 |
Q |
| |
|
|||||||||||| | ||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
48697739 |
aaacgtagcaaccgaagtcggcaaggtagagagattttgagagctcacaaaagtgactttaagtgggagattgtgaaca |
48697661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 1 - 579
Target Start/End: Complemental strand, 30946601 - 30946023
Alignment:
| Q |
1 |
aacctcaggtgttgcggtatgtttcggaggatcagagttaactgtcaggggttatgttgattcagattttgcaggtgatcatgataaaagaaaatctact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30946601 |
aacctcaggtgttgcggtatgtttcggaggatcagagttaactgtcaggggttatgttgattcagattttgcaggtgatcatgataaaagaaaatctact |
30946502 |
T |
|
| Q |
101 |
actggttatgtgttcacgcttgcaggaggagcagtaagttggttgtccaagttacaaacggttgtagctctgtcaacgacagaagcggagtacatggcag |
200 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30946501 |
actggttatgtgttcacgcttacaggaggagcagtaagttggttgtccaagttacaaacggttgtagctctgtcaacgacagaagcggagtacatggcag |
30946402 |
T |
|
| Q |
201 |
ctactcaagcatgcaaggaagctatttggatgcaaaggttaatggaggaactcgggcacaagcaggaacaaattactgtgtattgtgatagtcagagtgc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
30946401 |
ctactcaagcatgcaaggaagctatttggatgcaaaggttaatggaggaactcgggcacaagcaggaacaaattactgtgtattgtgacagtcagagtgc |
30946302 |
T |
|
| Q |
301 |
cttgcacattgcaaggaatccagcttttcattcaaggacgaaacacataggcgttcaatatcattttgttcgcgaagtagtagaggaaggaagcgtggat |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
30946301 |
cttgcacattgcaaggaatccagcttttcattcaaggacgaaacacataggcgttcaatatcattttgttcgcgaagtagtagaggagggaagtgtggac |
30946202 |
T |
|
| Q |
401 |
atgcagaagattcacactaatgataacctagcagatgcaatgacaaagtcgatcaacactgacaagtttatatggtgtcgatcttcgtatggcctattgg |
500 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||| |||||||||| |||||||| |||| |||||| ||||||||||||| |||||||||||||||| |
|
|
| T |
30946201 |
atgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaacgctgataagtttgtatggtgtcgatcctcgtatggcctattgg |
30946102 |
T |
|
| Q |
501 |
aaacgtagcaactggagttggcaaggtagagagactttgaatactcacaaaagtgactttaagtgggagattgtgaaca |
579 |
Q |
| |
|
|||||||||||| | ||| || |||||||||||| ||||| ||||||||||||||||||||||||||| |||||||| |
|
|
| T |
30946101 |
aaacgtagcaaccgaagtcggtaaggtagagagattttgagagctcacaaaagtgactttaagtgggagactgtgaaca |
30946023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 483
Target Start/End: Original strand, 2002782 - 2003264
Alignment:
| Q |
1 |
aacctcaggtgttgcggtatgtttcggaggatcagagttaactgtcaggggttatgttgattcagattttgcaggtgatcatgataaaagaaaatctact |
100 |
Q |
| |
|
||||| || |||||| |||||||| |||||| || || | ||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
2002782 |
aaccttagatgttgcattatgtttcagaggattggaatttattgtcaaaggttatgttgattcagattttgcaggtgatcttgataaaagaagatctact |
2002881 |
T |
|
| Q |
101 |
actggttatgtgttcacgcttgcaggaggagcagtaagttggttgtccaagttacaaacggttgtagctctgtcaacgacagaagcggagtacatggcag |
200 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||| || |||||| | || |||||||| || || |||||||| || || ||||||| |
|
|
| T |
2002882 |
actggttatgtgttcacacttgcaggaggagcagtaagttggttgtcaaaattacaatctgtcgtagctctatctactacagaagctgaatatatggcag |
2002981 |
T |
|
| Q |
201 |
ctactcaagcatgcaaggaagctatttggatgcaaaggttaatggaggaactcgggcacaagcaggaacaaattactgtgtattgtgatagtcagagtgc |
300 |
Q |
| |
|
||| ||||| |||||||||||||||||||| ||||| ||||||| ||||||||||||| || |||||||| |||||||||||| ||| ||||||| |
|
|
| T |
2002982 |
ctatgcaagcttgcaaggaagctatttggatacaaagactaatggaagaactcgggcacagtcaacaacaaattgttgtgtattgtgacagttagagtgc |
2003081 |
T |
|
| Q |
301 |
cttgcacattgcaaggaatccagcttttcattcaaggacgaaacacataggcgttcaatatcattttgttcgcgaagtagtagaggaaggaagcgtggat |
400 |
Q |
| |
|
||||| ||||||||||||||| |||||||| || || |||||||||| |||||||| ||||||||||| ||||| |||||| |||| || || ||| |
|
|
| T |
2003082 |
attgcatattgcaaggaatccattctttcattcgagaacaaaacacatagatgttcaataccattttgttcgagaagtggtagagaaagggagtgttgat |
2003181 |
T |
|
| Q |
401 |
atgcagaagattcacactaatgataacctagcagatgcaatgacaaagtcgatcaacactgacaagtttatatggtgtcgatc |
483 |
Q |
| |
|
|||||||| |||||||| || || || ||||||||| ||||||||||| ||||| |||||| |||| |||||||||||| |
|
|
| T |
2003182 |
atgcagaaaattcacaccaaagacaatttagcagatgttatgacaaagtcaatcaatgttgacaaatttacatggtgtcgatc |
2003264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 571 - 604
Target Start/End: Original strand, 42265653 - 42265686
Alignment:
| Q |
571 |
ttgtgaacatgtgtgaacaagtaaagccacattt |
604 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
42265653 |
ttgtgaacatgtgtgaacaagtaaagccacattt |
42265686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 584; Significance: 0; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 584; E-Value: 0
Query Start/End: Original strand, 1 - 604
Target Start/End: Complemental strand, 27875127 - 27874524
Alignment:
| Q |
1 |
aacctcaggtgttgcggtatgtttcggaggatcagagttaactgtcaggggttatgttgattcagattttgcaggtgatcatgataaaagaaaatctact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27875127 |
aacctcaggtgttgcggtatgtttcggaggatcagagttaactgtcaggggttatgttgattcagattttgcaggtgatcatgataaaagaaaatctact |
27875028 |
T |
|
| Q |
101 |
actggttatgtgttcacgcttgcaggaggagcagtaagttggttgtccaagttacaaacggttgtagctctgtcaacgacagaagcggagtacatggcag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27875027 |
actggttatgtgttcacgcttgcaggaggagcagtaagttggttgtccaagttacaaacggttgtagctctgtcaacgacagaagcggagtacatggcag |
27874928 |
T |
|
| Q |
201 |
ctactcaagcatgcaaggaagctatttggatgcaaaggttaatggaggaactcgggcacaagcaggaacaaattactgtgtattgtgatagtcagagtgc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
27874927 |
ctactcaagcatgcaaggaagctatttggatgcaaaggttaatggaggaactcgggcacaagcaggaacaaattactgtgtattgtgacagtcagagtgc |
27874828 |
T |
|
| Q |
301 |
cttgcacattgcaaggaatccagcttttcattcaaggacgaaacacataggcgttcaatatcattttgttcgcgaagtagtagaggaaggaagcgtggat |
400 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27874827 |
cttgcatattgcaaggaatccagcttttcattcaaggacgaaacacataggcattcaatatcattttgttcgcgaagtagtagaggaaggaagcgtggat |
27874728 |
T |
|
| Q |
401 |
atgcagaagattcacactaatgataacctagcagatgcaatgacaaagtcgatcaacactgacaagtttatatggtgtcgatcttcgtatggcctattgg |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
27874727 |
atgcagaagattcacactaatgataacctagcagatgcaatgacaaagtcgatcaacactgacaagtttatatggtgtcgatctttgtatggcctattgg |
27874628 |
T |
|
| Q |
501 |
aaacgtagcaactggagttggcaaggtagagagactttgaatactcacaaaagtgactttaagtgggagattgtgaacatgtgtgaacaagtaaagccac |
600 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27874627 |
aaacgtagcaactagagttggcaaggtagagagactttgaatactcacaaaagtgactttaagtgggagattgtgaacatgtgtgaacaagtaaagccac |
27874528 |
T |
|
| Q |
601 |
attt |
604 |
Q |
| |
|
|||| |
|
|
| T |
27874527 |
attt |
27874524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 1 - 589
Target Start/End: Complemental strand, 26977311 - 26976723
Alignment:
| Q |
1 |
aacctcaggtgttgcggtatgtttcggaggatcagagttaactgtcaggggttatgttgattcagattttgcaggtgatcatgataaaagaaaatctact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26977311 |
aacctcaggtgttgcggtatgtttcggaggatcagagttaactgtcaggggttatgttgattcagattttgcaggtgatcatgataaaagaaaatctact |
26977212 |
T |
|
| Q |
101 |
actggttatgtgttcacgcttgcaggaggagcagtaagttggttgtccaagttacaaacggttgtagctctgtcaacgacagaagcggagtacatggcag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
26977211 |
actggttatgtgttcacgcttgcaggaggagcagtaagttggttgtccaagttacaaactgttgtagctctgtcaacgacagaagctgagtacatggcag |
26977112 |
T |
|
| Q |
201 |
ctactcaagcatgcaaggaagctatttggatgcaaaggttaatggaggaactcgggcacaagcaggaacaaattactgtgtattgtgatagtcagagtgc |
300 |
Q |
| |
|
|||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
26977111 |
ctacccaagcatgcaaggaagctatctgggtgcaaaggttaatggaggaactcgggcacaagcaggagaaaattactgtgtattgtgacagtcagagtgc |
26977012 |
T |
|
| Q |
301 |
cttgcacattgcaaggaatccagcttttcattcaaggacgaaacacataggcgttcaatatcattttgttcgcgaagtagtagaggaaggaagcgtggat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||| ||||| |||||||||||| |
|
|
| T |
26977011 |
cttgcacattgcaaggaatccagcttttcattcaaggacgaagcacataggtgttcaatatcattttgttcgagaagtagtggaggagggaagcgtggat |
26976912 |
T |
|
| Q |
401 |
atgcagaagattcacactaatgataacctagcagatgcaatgacaaagtcgatcaacactgacaagtttatatggtgtcgatcttcgtatggcctattgg |
500 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
26976911 |
atgcaaaagattcacactaatgataacctagcagatgtaatgacaaagccgatcaacactgacaagtttatatggtgtcgatcctcgtatggcctattgg |
26976812 |
T |
|
| Q |
501 |
aaacgtagcaactggagttggcaaggtagagagactttgaatactcacaaaagtgactttaagtgggagattgtgaacatgtgtgaaca |
589 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26976811 |
aaacgtagcaactgaagttggcaaagtagagaaactttgaatgctcacaaaagtgactttaagtgggagattgtgaacatgtgtgaaca |
26976723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 50 - 483
Target Start/End: Complemental strand, 1472833 - 1472401
Alignment:
| Q |
50 |
ggttatgttgattcagattttgcaggtgatcatgataaaagaaaatctactactggttatgtgttcacgcttgcaggaggagcagtaagttggttgtcca |
149 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |
|
|
| T |
1472833 |
ggttatgttgattcagattttgcaggtgatcttgataaaagaagatctactactggttatgtgttcacacttgcaggaggagcagtaagttggttgtcaa |
1472734 |
T |
|
| Q |
150 |
agttacaaacggttgtagctctgtcaacgacagaagcggagtacatggcagctactcaagcatgcaaggaagctatttggatgcaaaggttaatggagga |
249 |
Q |
| |
|
| |||||| | | |||||||| || || |||||||| || || ||||||||||| ||||| |||||||||||||||||||| ||||| ||||||| || |
|
|
| T |
1472733 |
aattacaattg-tcgtagctctctctactacagaagctgaatatatggcagctacgcaagcttgcaaggaagctatttggatacaaagactaatggaaga |
1472635 |
T |
|
| Q |
250 |
actcgggcacaagcaggaacaaattactgtgtattgtgatagtcagagtgccttgcacattgcaaggaatccagcttttcattcaaggacgaaacacata |
349 |
Q |
| |
|
||||| ||||| || |||||||| |||||||||||| ||||||||||| |||||||||||| | ||||||| |||||||| || || ||||||||| |
|
|
| T |
1472634 |
actcgtgcacagtcaacaacaaattgttgtgtattgtgacagtcagagtgcattgcacattgcatgtaatccagtctttcattcgagaacaaaacacata |
1472535 |
T |
|
| Q |
350 |
ggcgttcaatatcattttgttcgcgaagtagtagaggaaggaagcgtggatatgcagaagattcacactaatgataacctagcagatgcaatgacaaagt |
449 |
Q |
| |
|
| |||||||| ||||||||||| |||||||||||| || | || || ||||||||||| |||||||| || || || ||||||||| |||||||||| |
|
|
| T |
1472534 |
gatgttcaataccattttgttcgagaagtagtagagaaaaggagtgttgatatgcagaaaattcacaccaaagacaatttagcagatgttatgacaaagt |
1472435 |
T |
|
| Q |
450 |
cgatcaacactgacaagtttatatggtgtcgatc |
483 |
Q |
| |
|
| ||||| ||||||| |||| |||||||||||| |
|
|
| T |
1472434 |
caatcaatgctgacaaatttacatggtgtcgatc |
1472401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 22 - 446
Target Start/End: Original strand, 21965303 - 21965725
Alignment:
| Q |
22 |
tttcggaggatcagagttaactgtcaggggttatgttgattcagattttgcaggtgatcatgataaaagaaaatctactactggttatgtgttcacgctt |
121 |
Q |
| |
|
||||||||||| | |||||||| ||||||||||| ||||||| |||||||| |||||||||||| |||||||| |||| ||| ||||||||||||||| |
|
|
| T |
21965303 |
tttcggaggattaaagttaactatcaggggttatattgattcgaattttgcacttgatcatgataatagaaaatcaactattggatatgtgttcacgctt |
21965402 |
T |
|
| Q |
122 |
gcaggaggagcagtaagttggttgtccaagttacaaacggttgtagctctgtcaacgacagaagcggagtacatggcagctactcaagcatgcaaggaag |
221 |
Q |
| |
|
|| || |||||||||||||||| ||||||||||||| ||||||||||||||||| || |||| ||||| | ||||||| |||||||| |||| |
|
|
| T |
21965403 |
ccaagatgagcagtaagttggttacccaagttacaaactattgtagctctgtcaacgtcaaaagcttcgtacaagacagctaccttagcatgcatggaaa |
21965502 |
T |
|
| Q |
222 |
ctatttggatgcaaaggttaatggaggaactcgggcacaagcaggaacaaattactgtgtattgtgatagtcagagtgccttgcacattgcaaggaatcc |
321 |
Q |
| |
|
|||||||||||| ||||||||| ||| |||| |||| |||||| ||| ||||| ||||||| ||| ||||||||| ||||||||||| |||||||||| |
|
|
| T |
21965503 |
ctatttggatgcgaaggttaattgagcaacttaggcataagcagcaacgaattattgtgtat--tgacagtcagagtaccttgcacatttcaaggaatcc |
21965600 |
T |
|
| Q |
322 |
agcttttcattcaaggacgaaacacataggcgttcaatatcattttgttcgcgaagtagtagaggaaggaagcgtggatatgcagaagattcacactaat |
421 |
Q |
| |
|
| ||||||||||||| ||| | |||| ||||||||||||| |||||||| | |||||||| ||||| |||| |||||||||||||| |||||| ||| |
|
|
| T |
21965601 |
aacttttcattcaagaacggagcacacaggcgttcaatattattttgtttgagaagtagtgaaggaatgaagggtggatatgcagaatgctcacaccaat |
21965700 |
T |
|
| Q |
422 |
gataacctagcagatgcaatgacaa |
446 |
Q |
| |
|
|||||||||| ||||| |||||||| |
|
|
| T |
21965701 |
gataacctagaagatgtaatgacaa |
21965725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 288 - 577
Target Start/End: Original strand, 18967254 - 18967543
Alignment:
| Q |
288 |
atagtcagagtgccttgcacattgcaaggaatccagcttttcattcaaggacgaaacacataggcgttcaatatcattttgttcgcgaagtagtagagga |
387 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||| |
|
|
| T |
18967254 |
atagtcagagtgccttacacattgcaaggaatccaacttttcattcaaggacgaaacacataggcgttaaatatcattttgttcgacaagtagtggagga |
18967353 |
T |
|
| Q |
388 |
aggaagcgtggatatgcagaagattcacactaatgataacctagcagatgcaatgacaaagtcgatcaacactgacaagtttatatggtgtcgatcttcg |
487 |
Q |
| |
|
||||| ||||| ||||||||||||||||| |||||||| |||||||||| |||||||| | ||||| ||||||||||||||||||||||||| || |
|
|
| T |
18967354 |
gggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtgatgacaaaaccaatcaatgctgacaagtttatatggtgtcgatcctcc |
18967453 |
T |
|
| Q |
488 |
tatggcctattggaaacgtagcaactggagttggcaaggtagagagactttgaatactcacaaaagtgactttaagtgggagattgtgaa |
577 |
Q |
| |
|
|||||||||||| |||| ||||||| || | || |||||||||||| |||| | ||| ||||||| ||||||||||||||||||||| |
|
|
| T |
18967454 |
tatggcctattgaaaacatagcaacatgaatgggtaaggtagagagattttggaagctcgcaaaagtagctttaagtgggagattgtgaa |
18967543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 119 - 241
Target Start/End: Original strand, 18967120 - 18967241
Alignment:
| Q |
119 |
cttgcaggaggagcagtaagttggttgtccaagttacaaacggttgtagctctgtcaacgacagaagcggagtacatggcagctactcaagcatgcaagg |
218 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||||||||| |||||||| |||||||| ||||||||||| | |
|
|
| T |
18967120 |
cttgcaggaggagcagtaagttggttatccaagttacaa-ctgttgtagctctgtcaacgacagaagctgagtacattgcagctacccaagcatgcaatg |
18967218 |
T |
|
| Q |
219 |
aagctatttggatgcaaaggtta |
241 |
Q |
| |
|
|||||||||||||||||| |||| |
|
|
| T |
18967219 |
aagctatttggatgcaaacgtta |
18967241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 520 - 580
Target Start/End: Original strand, 30968569 - 30968629
Alignment:
| Q |
520 |
ggcaaggtagagagactttgaatactcacaaaagtgactttaagtgggagattgtgaacat |
580 |
Q |
| |
|
||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30968569 |
ggcaaggtagagagattttgagtgctcacaaaagtgactttaagtgggagattgtgaacat |
30968629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 460 - 580
Target Start/End: Original strand, 21966489 - 21966604
Alignment:
| Q |
460 |
tgacaagtttatatggtgtcgatcttcgtatggcctattggaaacgtagcaact-ggagttggcaaggtagagagactttgaatactcacaaaagtgact |
558 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||| | |||||||||||| ||||||||||||||||||||| |||||| || ||||||||| || |
|
|
| T |
21966489 |
tgacaagtttgtatggtgtcgatcctcgtatg------ttgaaacgtagcaataaggagttggcaaggtagagagattttgaaatcttacaaaagtggct |
21966582 |
T |
|
| Q |
559 |
ttaagtgggagattgtgaacat |
580 |
Q |
| |
|
||||||||| ||||||||||| |
|
|
| T |
21966583 |
gtaagtgggatattgtgaacat |
21966604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 545 - 582
Target Start/End: Complemental strand, 1472378 - 1472341
Alignment:
| Q |
545 |
tcacaaaagtgactttaagtgggagattgtgaacatgt |
582 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
1472378 |
tcacaaaagtgactttaagtgggagattgtgaagatgt |
1472341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 528; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 1 - 604
Target Start/End: Original strand, 54545044 - 54545647
Alignment:
| Q |
1 |
aacctcaggtgttgcggtatgtttcggaggatcagagttaactgtcaggggttatgttgattcagattttgcaggtgatcatgataaaagaaaatctact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54545044 |
aacctcaggtgttgcggtatgtttcggaggatcagagttaactgtcaggggttatgttgattcagattttgcaggtgatcatgataaaagaaaatctact |
54545143 |
T |
|
| Q |
101 |
actggttatgtgttcacgcttgcaggaggagcagtaagttggttgtccaagttacaaacggttgtagctctgtcaacgacagaagcggagtacatggcag |
200 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
54545144 |
actggttatgtgttcacacttgccggaggagcagtaagttggttgtccaagttacaaactgttgtagctctgtcaacgacagaagctgagtacatggcag |
54545243 |
T |
|
| Q |
201 |
ctactcaagcatgcaaggaagctatttggatgcaaaggttaatggaggaactcgggcacaagcaggaacaaattactgtgtattgtgatagtcagagtgc |
300 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
54545244 |
ctacccaagcatgcaaggaagctatttggatgcaaaggttaatggaggaactcgggcacaagcaggaacaaattattgtgtattgtgacagtcagagtgc |
54545343 |
T |
|
| Q |
301 |
cttgcacattgcaaggaatccagcttttcattcaaggacgaaacacataggcgttcaatatcattttgttcgcgaagtagtagaggaaggaagcgtggat |
400 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
54545344 |
attgcacattgcaaggaattcaacttttcattcaaggacgaaacacataggcgttcaatatcattttattcgagaagtagtagaggaaggaagcgtggat |
54545443 |
T |
|
| Q |
401 |
atgcagaagattcacactaatgataacctagcagatgcaatgacaaagtcgatcaacactgacaagtttatatggtgtcgatcttcgtatggcctattgg |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
54545444 |
atgcagaagattcacactaatgataacctagcagatgtaatgacaaagccgatcaacactgacaagtttatatggtgtcgatcctcgtatggcctattgg |
54545543 |
T |
|
| Q |
501 |
aaacgtagcaactggagttggcaaggtagagagactttgaatactcacaaaagtgactttaagtgggagattgtgaacatgtgtgaacaagtaaagccac |
600 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54545544 |
aaacatagcaactgaagttggcaaggtagagaggctttgaatgctcacaaaagtgactttaagtgggagattgtgaacatgtgtgaacaagtaaagccac |
54545643 |
T |
|
| Q |
601 |
attt |
604 |
Q |
| |
|
|||| |
|
|
| T |
54545644 |
attt |
54545647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 1 - 589
Target Start/End: Complemental strand, 5819693 - 5819105
Alignment:
| Q |
1 |
aacctcaggtgttgcggtatgtttcggaggatcagagttaactgtcaggggttatgttgattcagattttgcaggtgatcatgataaaagaaaatctact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5819693 |
aacctcaggtgttgcggtatgtttcggaggatcagagttaactgtcaggggttatgttgattcagattttgcaggtgatcatgataaaagaaaatctact |
5819594 |
T |
|
| Q |
101 |
actggttatgtgttcacgcttgcaggaggagcagtaagttggttgtccaagttacaaacggttgtagctctgtcaacgacagaagcggagtacatggcag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
5819593 |
actggttatgtgttcacgcttgcaggaggagcagtaagttggttgtccaagttacaaactgttgtagctctgtcaacgacagaagctgagtacatggcag |
5819494 |
T |
|
| Q |
201 |
ctactcaagcatgcaaggaagctatttggatgcaaaggttaatggaggaactcgggcacaagcaggaacaaattactgtgtattgtgatagtcagagtgc |
300 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
5819493 |
ctacccaagcatgcaaggaagctatctggatgcaaaggttaatggaggaactcgggcacaagcaggagaaaattactgtgtattgtgacagtcagagtgc |
5819394 |
T |
|
| Q |
301 |
cttgcacattgcaaggaatccagcttttcattcaaggacgaaacacataggcgttcaatatcattttgttcgcgaagtagtagaggaaggaagcgtggat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||| |
|
|
| T |
5819393 |
cttgcacattgcaaggaatccagcttttcattcaaggacgaagcacataggcgttcaatatcattttgttcgagaagtagtggaggagggaagcgtggat |
5819294 |
T |
|
| Q |
401 |
atgcagaagattcacactaatgataacctagcagatgcaatgacaaagtcgatcaacactgacaagtttatatggtgtcgatcttcgtatggcctattgg |
500 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| || |||||||||| |||||||||||||||||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
5819293 |
atgcaaaagattcacactaatgataacctagcagttgtaatgacaaagccgatcaacactgacaagtttatatggcgtcgatcctcgtatggcctattgg |
5819194 |
T |
|
| Q |
501 |
aaacgtagcaactggagttggcaaggtagagagactttgaatactcacaaaagtgactttaagtgggagattgtgaacatgtgtgaaca |
589 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
5819193 |
aaacgtagcaactgaagttggcaaagtagagaaactttgaatgctcacaaaagtaactttaagtgggagattgtgaacatgtgtgaaca |
5819105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 50 - 483
Target Start/End: Original strand, 42588896 - 42589329
Alignment:
| Q |
50 |
ggttatgttgattcagattttgcaggtgatcatgataaaagaaaatctactactggttatgtgttcacgcttgcaggaggagcagtaagttggttgtcca |
149 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||| |||||||||||||| |||||||||||||| | |
|
|
| T |
42588896 |
ggttatgttgattcagattttgcaggtgatcttgataaaagaagatctactgctggttatgtgttcacacttgcaggaggagcggtaagttggttgtcaa |
42588995 |
T |
|
| Q |
150 |
agttacaaacggttgtagctctgtcaacgacagaagcggagtacatggcagctactcaagcatgcaaggaagctatttggatgcaaaggttaatggagga |
249 |
Q |
| |
|
| |||||| | || |||||||| || || |||||||| || || ||||||||||| ||||| |||||||||||||||||||| ||||| ||||||| || |
|
|
| T |
42588996 |
aattacaatctgtcgtagctctatctactacagaagctgaatatatggcagctacgcaagcttgcaaggaagctatttggatacaaagactaatggaaga |
42589095 |
T |
|
| Q |
250 |
actcgggcacaagcaggaacaaattactgtgtattgtgatagtcagagtgccttgcacattgcaaggaatccagcttttcattcaaggacgaaacacata |
349 |
Q |
| |
|
||||||||||| || |||||||| |||||||||||| ||||| ||||| |||||||||||||||||||||| |||||||| || || ||||||||| |
|
|
| T |
42589096 |
actcgggcacagtcaacaacaaattgttgtgtattgtgacagtcatagtgcattgcacattgcaaggaatccagtctttcattcgagaacaaaacacata |
42589195 |
T |
|
| Q |
350 |
ggcgttcaatatcattttgttcgcgaagtagtagaggaaggaagcgtggatatgcagaagattcacactaatgataacctagcagatgcaatgacaaagt |
449 |
Q |
| |
|
|| |||||||| ||||||||||| ||||| |||||| |||| || || ||||||||||| |||||||| || || || |||||||| |||||||||| |
|
|
| T |
42589196 |
ggtgttcaataccattttgttcgagaagtggtagagaaagggagtgttgatatgcagaaaattcacaccaaagacaatttagcagatattatgacaaagt |
42589295 |
T |
|
| Q |
450 |
cgatcaacactgacaagtttatatggtgtcgatc |
483 |
Q |
| |
|
| ||||| ||||||| |||| ||||||| |||| |
|
|
| T |
42589296 |
caatcaatgctgacaaatttacatggtgtagatc |
42589329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 49 - 299
Target Start/End: Original strand, 25880790 - 25881042
Alignment:
| Q |
49 |
gggttatgttgattcagattttgcaggtgatcatgataaaagaaaa---tctactactggttatgtgttcacgcttgcaggaggagcagtaagttggttg |
145 |
Q |
| |
|
||||||||| ||||||||||||||||| |||| |||||||| |||| |||||||| ||||||||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
25880790 |
gggttatgtagattcagattttgcaggagatcttgataaaaaaaaaaaatctactaccggttatgtgttcatacttgcaggaggagcaataagttggttg |
25880889 |
T |
|
| Q |
146 |
tccaagttacaaacggttgtagctctgtcaacgacagaagcggagtacatggcagctactcaagcatgcaaggaagctatttggatgcaaaggttaatgg |
245 |
Q |
| |
|
|| || ||||||| ||||| ||||| || || ||| | || || || || | | |||| ||||| ||| |||||||||||||||| |||||| |||||| |
|
|
| T |
25880890 |
tcaaaattacaaattgttgtcgctctatctactacatatgctgaatatattgtacctacgcaagcttgctaggaagctatttggatacaaaggctaatgg |
25880989 |
T |
|
| Q |
246 |
aggaactcgggcacaagcaggaacaaattactgtgtattgtgatagtcagagtg |
299 |
Q |
| |
|
| ||| || ||||||| || |||||||| ||||||||||| | ||||||||| |
|
|
| T |
25880990 |
aagaa-tcaggcacaatcaacaacaaattgttgtgtattgtgttggtcagagtg |
25881042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 43 - 158
Target Start/End: Original strand, 25880233 - 25880348
Alignment:
| Q |
43 |
tgtcaggggttatgttgattcagattttgcaggtgatcatgataaaagaaaatctactactggttatgtgttcacgcttgcaggaggagcagtaagttgg |
142 |
Q |
| |
|
||||| ||||| |||| ||||||||||| |||||||| ||||||||||| ||||| ||| |||||||||||||| |||||| |||||||| |||||||| |
|
|
| T |
25880233 |
tgtcaagggttttgttaattcagattttataggtgatcgtgataaaagaatatctaataccggttatgtgttcacacttgcaagaggagcaataagttgg |
25880332 |
T |
|
| Q |
143 |
ttgtccaagttacaaa |
158 |
Q |
| |
|
||||| || ||||||| |
|
|
| T |
25880333 |
ttgtcaaaattacaaa |
25880348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 545 - 582
Target Start/End: Original strand, 42589352 - 42589389
Alignment:
| Q |
545 |
tcacaaaagtgactttaagtgggagattgtgaacatgt |
582 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
42589352 |
tcacaaaagtgactttaagtgggagattgtgaagatgt |
42589389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 297 - 399
Target Start/End: Original strand, 35975710 - 35975810
Alignment:
| Q |
297 |
gtgccttgcacattgcaaggaatccagcttttcattcaaggacgaaacacataggcgttcaatatcattttgttcgcgaagtagtagaggaaggaagcgt |
396 |
Q |
| |
|
|||||||||||||||||| ||||||| | |||||||||||||| ||| | |||||||| ||||||||||||| | |||||||| | ||| |||| || |
|
|
| T |
35975710 |
gtgccttgcacattgcaa-gaatccaacgtttcattcaaggacaaaata-gcaggcgttcgatatcattttgtttgaaaagtagtaaatgaaagaagtgt |
35975807 |
T |
|
| Q |
397 |
gga |
399 |
Q |
| |
|
||| |
|
|
| T |
35975808 |
gga |
35975810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 521; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 1 - 589
Target Start/End: Original strand, 41722309 - 41722897
Alignment:
| Q |
1 |
aacctcaggtgttgcggtatgtttcggaggatcagagttaactgtcaggggttatgttgattcagattttgcaggtgatcatgataaaagaaaatctact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41722309 |
aacctcaggtgttgcggtatgtttcggaggatcagagttaactgtcaggggttatgttgattcagattttgcaggtgatcatgataaaagaaaatctact |
41722408 |
T |
|
| Q |
101 |
actggttatgtgttcacgcttgcaggaggagcagtaagttggttgtccaagttacaaacggttgtagctctgtcaacgacagaagcggagtacatggcag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41722409 |
actggttatgtgttcacgcttgcaggaggagcagtaagttggttgtccaagttacaaacggttgtagctctgtcaacgacagaagcggagtacatggcag |
41722508 |
T |
|
| Q |
201 |
ctactcaagcatgcaaggaagctatttggatgcaaaggttaatggaggaactcgggcacaagcaggaacaaattactgtgtattgtgatagtcagagtgc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
41722509 |
ctactcaagcatgcaaggaagctatttggatgcaaaggttaatggaggaactcgggcacaagcaggaacaaattactgtgtattgtgacagtcagagtgc |
41722608 |
T |
|
| Q |
301 |
cttgcacattgcaaggaatccagcttttcattcaaggacgaaacacataggcgttcaatatcattttgttcgcgaagtagtagaggaaggaagcgtggat |
400 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
41722609 |
cttgcatattgcaaggaatccagcttttcattcaaggacgaaacacataggcgttcaatatcattttgttcgcgaagtagtagaggagggaagtgtggac |
41722708 |
T |
|
| Q |
401 |
atgcagaagattcacactaatgataacctagcagatgcaatgacaaagtcgatcaacactgacaagtttatatggtgtcgatcttcgtatggcctattgg |
500 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||| |||||||||| |||||||| |||| |||||| ||||||||||||| |||||||||||||||| |
|
|
| T |
41722709 |
atgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaacgctgataagtttgtatggtgtcgatcctcgtatggcctattgg |
41722808 |
T |
|
| Q |
501 |
aaacgtagcaactggagttggcaaggtagagagactttgaatactcacaaaagtgactttaagtgggagattgtgaacatgtgtgaaca |
589 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41722809 |
aaacgtagcaactggagttggcaaggtagagagattttggaagctcacaaaagtgactttaagtgggagattgtgaacatgtgtgaaca |
41722897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 34355909 - 34356196
Alignment:
| Q |
1 |
aacctcaggtgttgcggtatgtttcggaggatcagagttaactgtcaggggttatgttgattcagattttgcaggtgatcatgataaaagaaaatctact |
100 |
Q |
| |
|
||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34355909 |
aaccttaggtgttgcagtatgtttcggaggatcagagttaactgtcaggggttatgttgattcagattttgcaggtgatcatgataaaagaaaatctact |
34356008 |
T |
|
| Q |
101 |
actggttatgtgttcacgcttgcaggaggagcagtaagttggttgtccaagttacaaacggttgtagctctgtcaacgacagaagcggagtacatggcag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
34356009 |
actggttatgtgttcacgcttgcaggaggagcagtaagttggttgtccaagttacaaactgttgtagctctgtcaacgacagaagctgagtacatggcag |
34356108 |
T |
|
| Q |
201 |
ctactcaagcatgcaaggaagctatttggatgcaaaggttaatggaggaactcgggcacaagcaggaacaaattactgtgtattgtga |
288 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
34356109 |
ctacccaagcatgcaaggaagctatttggatgcaaaggttaatggaggaactcgggcacaagcaagagaaaattactgtgtattgtga |
34356196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 290 - 580
Target Start/End: Original strand, 34359377 - 34359667
Alignment:
| Q |
290 |
agtcagagtgccttgcacattgcaaggaatccagcttttcattcaaggacgaaacacataggcgttcaatatcattttgttcgcgaagtagtagaggaag |
389 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||| ||||| | |
|
|
| T |
34359377 |
agtcagagtgccttacacattgcaaggaatccagcttttcattcaaggacgaagcacattggcgttcaatatcattttgttcgagaagtagtggaggagg |
34359476 |
T |
|
| Q |
390 |
gaagcgtggatatgcagaagattcacactaatgataacctagcagatgcaatgacaaagtcgatcaacactgacaagtttatatggtgtcgatcttcgta |
489 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||||||||| |||| |||||||||| |||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
34359477 |
gaagcgtggatatgcaaaagattcacaccaatgataacctagcggatgtaatgacaaagccgatcaacgctgacaagtttatatggtgtcgatcctcgta |
34359576 |
T |
|
| Q |
490 |
tggcctattggaaacgtagcaactggagttggcaaggtagagagactttgaatactcacaaaagtgactttaagtgggagattgtgaacat |
580 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34359577 |
tggcctattggaaacgtagcaactggagttggcaaggtagagatactttgaatgctcacaaaagtgactttaagtgggagattgtgaacat |
34359667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 501; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 1 - 581
Target Start/End: Original strand, 829378 - 829958
Alignment:
| Q |
1 |
aacctcaggtgttgcggtatgtttcggaggatcagagttaactgtcaggggttatgttgattcagattttgcaggtgatcatgataaaagaaaatctact |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
829378 |
aaccccaggtgttgcggtatgtttcggaggatcagagttaactgtcaggggttatgttgattcagattttgcaggtgatcaggataaaagaaaatctact |
829477 |
T |
|
| Q |
101 |
actggttatgtgttcacgcttgcaggaggagcagtaagttggttgtccaagttacaaacggttgtagctctgtcaacgacagaagcggagtacatggcag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
829478 |
actggttatgtgttcacgcttgcaggaggagcagtaagttggttatccaagttacaaactgttgtagctctgtcaacgacagaagctgagtacatggcag |
829577 |
T |
|
| Q |
201 |
ctactcaagcatgcaaggaagctatttggatgcaaaggttaatggaggaactcgggcacaagcaggaacaaattactgtgtattgtgatagtcagagtgc |
300 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
829578 |
ctacccaagcatgcaaggaagctatctggatgcaaaggttaatggaggaactcgggcacaagcaggagaaaattactgtgtattgtgacagtcagagtgc |
829677 |
T |
|
| Q |
301 |
cttgcacattgcaaggaatccagcttttcattcaaggacgaaacacataggcgttcaatatcattttgttcgcgaagtagtagaggaaggaagcgtggat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
829678 |
cttgcacattgcaaggaatccagcttttcattcaaggacgaaacacataggcgttcaatatcattttgttcgagaagtagtagaggaaggaagcgtggat |
829777 |
T |
|
| Q |
401 |
atgcagaagattcacactaatgataacctagcagatgcaatgacaaagtcgatcaacactgacaagtttatatggtgtcgatcttcgtatggcctattgg |
500 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
829778 |
atgtagaagattcacactaatgataacctagcagatgtaatgacaaagccgatcaacactgacaagtttatatggtgtcgatcctcgtatggcctattgg |
829877 |
T |
|
| Q |
501 |
aaacgtagcaactggagttggcaaggtagagagactttgaatactcacaaaagtgactttaagtgggagattgtgaacatg |
581 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||| |
|
|
| T |
829878 |
aaacatagcaactggagttggcaaggtagagagactttgaatgctcacaaaagtagctttaagtgggatattgtgaacatg |
829958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 581
Target Start/End: Original strand, 28714982 - 28715550
Alignment:
| Q |
1 |
aacctcaggtgttgcggtatgtttcggaggatcagagttaactgtcaggggttatgttgattcagattttgcaggtgatcatgataaaagaaaatctact |
100 |
Q |
| |
|
||||||| ||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||| ||||||||||| | |
|
|
| T |
28714982 |
aacctcatgtgttgcaatatgtttcggaggatcagagttaattgtcatgggttatgttgattcagattttgccggtgatcatgatgaaagaaaatctttt |
28715081 |
T |
|
| Q |
101 |
actggttatgtgttcacgcttgcaggaggagcagtaagttggttgtccaagttacaaacggttgtagctctgtcaacgacagaagcggagtacatggcag |
200 |
Q |
| |
|
|||||||| ||||||| |||||| ||||||||||||||||||| |||||||||||||| ||||||||| |||||||| ||||||| ||||||||||||| |
|
|
| T |
28715082 |
actggttacgtgttcatgcttgcgagaggagcagtaagttggttatccaagttacaaactgttgtagctatgtcaacgtcagaagctgagtacatggcag |
28715181 |
T |
|
| Q |
201 |
ctactcaagcatgcaaggaagctatttggatgcaaaggttaatggaggaactcgggcacaagcaggaacaaattactgtgtattgtgatagtcagagtgc |
300 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| | ||||| |
|
|
| T |
28715182 |
ctacccaagcatgcaaggaagctatttggatgcaaaggttaatggaggtactcgggcacaagcaggagcaaattactgtgtattgtgatagttatagtgc |
28715281 |
T |
|
| Q |
301 |
cttgcacattgcaaggaatccagcttttcattcaaggacgaaacacataggcgttcaatatcattttgttcgcgaagtagtagaggaaggaagcgtggat |
400 |
Q |
| |
|
|||||| |||||| |||||| |||||||| ||| |||||||| |||||||||||||||||||| | ||| || |||| ||| || ||| || |
|
|
| T |
28715282 |
cttgca----------aatccaacttttcgttcaaggatgaagcacataggtgttcaatatcattttgttcgagtagt-gtggagg-agggagtgtgaat |
28715369 |
T |
|
| Q |
401 |
atgcagaagattcacactaatgataacctagcagatgcaatgacaaagtcgatcaacactgacaagtttatatggtgtcgatcttcgtatggcctattgg |
500 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||| ||| ||||||||| || |||||||||||| |
|
|
| T |
28715370 |
atgcataagattcacaccaatgataacctagcagatgtaatgacaaagtcgatcaatgctgacaagtttctatagtgtcgatcctcatatggcctattga |
28715469 |
T |
|
| Q |
501 |
aaacgtagcaactggagttggcaaggtagagagactttgaatactcacaaaagtgactttaagtgggagattgtgaacatg |
581 |
Q |
| |
|
||| |||||||| | ||||||| ||||||||||| ||||||| || | ||| || ||||||||||||||||||||||||| |
|
|
| T |
28715470 |
aaatgtagcaacggaagttggcgaggtagagagattttgaattctaaaaaatgtagctttaagtgggagattgtgaacatg |
28715550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 1 - 582
Target Start/End: Complemental strand, 13841337 - 13840763
Alignment:
| Q |
1 |
aacctcaggtgttgcggtatgtttcggaggatcagagttaactgtcaggggttatgttgattcagattttgcaggtgatcatgataaaagaaaatctact |
100 |
Q |
| |
|
||||||| ||||||| |||||||||||||||||||||||| || || |||||||||||||||||||||| || ||||||||||||| | |||||||||| |
|
|
| T |
13841337 |
aacctcaagtgttgcaatatgtttcggaggatcagagttaaatgacaagggttatgttgattcagattttacaagtgatcatgataatataaaatctact |
13841238 |
T |
|
| Q |
101 |
actggttatgtgttcacgcttgcaggaggagcagtaagttggttgtccaagttacaaacggttgtagctctgtcaacgacagaagcggagtacatggcag |
200 |
Q |
| |
|
| ||||||||||||| || | ||||||| ||||||||||| ||||||||| || ||||||| ||||||||||| || | |||||||||||| |
|
|
| T |
13841237 |
---gattatgtgttcacgtttatacgaggagcggtaagttggttatccaagttagaa-----tgtagctttgtcaacgacaaaa-ctgagtacatggcat |
13841147 |
T |
|
| Q |
201 |
ctactcaagcatgcaaggaagctatttggatgcaaaggttaatggaggaactcgggcacaagcaggaacaaattactgtgtattgtgatagtcagagtgc |
300 |
Q |
| |
|
|| | || || |||||||||| |||||| ||||||||||||||||||||||| |||||||| || | ||||||||| |||||||||| | | ||| ||| |
|
|
| T |
13841146 |
cttcccatgcttgcaaggaagttatttgaatgcaaaggttaatggaggaacttgggcacaaacaacatcaaattactatgtattgtgacaattagaatgc |
13841047 |
T |
|
| Q |
301 |
cttgcacattgcaaggaatccagcttttcattcaaggacgaaacacataggcgttcaatatcattttgttcgcgaagtagtagaggaaggaagcgtggat |
400 |
Q |
| |
|
||| ||||||||||| ||| || ||||||||||||||| ||||||||| | ||||||||||||||||||| ||||||| || |||||||| ||||| |
|
|
| T |
13841046 |
ctttcacattgcaagaaattca-tttttcattcaaggacaaaacacataagtgttcaatatcattttgttc-aaaagtagtcgacgaaggaagtatggat |
13840949 |
T |
|
| Q |
401 |
atgcagaagattcacactaatgataacctagcagatgcaatgacaaagtcgatcaacactgacaagtttatatggtgtcgatctt----cgtatggccta |
496 |
Q |
| |
|
||||||||||||| || | |||||||||| | |||| ||||||| ||||||| || | |||||| ||||| ||||||| | ||||| |||| |
|
|
| T |
13840948 |
gtgcagaagattcagacaagtgataacctaacggatgtggtgacaaaaccgatcaatgctaataagtttgtatggcgtcgatcctgggaagtatgaccta |
13840849 |
T |
|
| Q |
497 |
ttggaaacgtagcaactggagttggcaaggtagagagactttgaatactcacaaaagtgactttaagtgggagattgtgaacatgt |
582 |
Q |
| |
|
|||||||| ||||||| |||||||||||| ||||| | ||| | ||||||||||| |||||||| |||||||| ||||||| |
|
|
| T |
13840848 |
ttggaaacatagcaacaagagttggcaaggcagagaaattttagaagctcacaaaagtagatttaagtgagagattgtaaacatgt |
13840763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 1 - 577
Target Start/End: Complemental strand, 28453 - 27877
Alignment:
| Q |
1 |
aacctcaggtgttgcggtatgtttcggaggatcagagttaactgtcaggggttatgttgattcagattttgcaggtgatcatgataaaagaaaatctact |
100 |
Q |
| |
|
|||||| | |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
28453 |
aacctcggatgttgcaatatgtttcagaggatcagagttaactgtcaggggttatgttgattcagattttgtaggtgatcatgataaaagaaaatctact |
28354 |
T |
|
| Q |
101 |
actggttatgtgttcacgcttgcaggaggagcagtaagttggttgtccaagttacaaacggttgtagctctgtcaacgacagaagcggagtacatggcag |
200 |
Q |
| |
|
|||| |||||||||||| ||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28353 |
actgattatgtgttcacactttcaggaggagcagtaagttggttatccaagttacaaactgttgtagctctgtcaacgacagaagcggagtacatggcag |
28254 |
T |
|
| Q |
201 |
ctactcaagcatgcaaggaagctatttggatgcaaaggttaatggaggaactcgggcacaagcaggaacaaattactgtgtattgtgatagtcagagtgc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
28253 |
ctactcaagcatgcaaggaagctatttggttgcaaaggtttatggaggaactcgtgcacaagcaggattaaattactgtgtattgtgacagtcagagtgc |
28154 |
T |
|
| Q |
301 |
cttgcacattgcaaggaatccagcttttcattcaaggacgaaacacataggcgttcaatatcattttgttcgcgaagtagtagaggaaggaagcgtggat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||| ||||| |
|
|
| T |
28153 |
cttgcacattgcaaggaatccagcttttcattcaaggacgaaacacataggcgttcaatatcattttgttcgagaagtagtggaggagggaagtgtggac |
28054 |
T |
|
| Q |
401 |
atgcagaagattcacactaatgataacctagcagatgcaatgacaaagtcgatcaacactgacaagtttatatggtgtcgatcttcgtatggcctattgg |
500 |
Q |
| |
|
||||||||||||||||| |||||||| |||| ||||| || ||||| | ||||| ||||||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
28053 |
atgcagaagattcacaccaatgataatctagtagatgtgattacaaaaccaatcaatgctgacaagtttatatggtgtcgatcctcctatggcctattgg |
27954 |
T |
|
| Q |
501 |
aaacgtagcaactggagttggcaaggtagagagactttgaatactcacaaaagtgactttaagtgggagattgtgaa |
577 |
Q |
| |
|
|||||||||||| || | ||||||||| ||||| |||| | ||| ||||||| ||||||||||||||||||||| |
|
|
| T |
27953 |
aaacgtagcaacatgaatgggcaaggtaaagagattttggaagctcgcaaaagtagctttaagtgggagattgtgaa |
27877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 302; Significance: 1e-169; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 1 - 577
Target Start/End: Complemental strand, 2324525 - 2323956
Alignment:
| Q |
1 |
aacctcaggtgttgcggtatgtttcggaggatcagagttaactgtcaggggttatgttgattcagattttgcaggtgatcatgataaaagaaaatctact |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| || |||| | | |||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2324525 |
aacctcaggtgttgcaatatgtttcggaggatcagagttaaccgttgggggatttcttgagtcagattttgcaggtgatcatgataaaagaaaatctact |
2324426 |
T |
|
| Q |
101 |
actggttatgtgttcacgcttgcaggaggagcagtaagttggttgtccaagttacaaacggttgtagctctgtcaacgacagaagcggagtacatggcag |
200 |
Q |
| |
|
||| ||||||||||||| ||||||||||||| ||||||| ||| |||||||||||||| ||||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
2324425 |
actagttatgtgttcacacttgcaggaggagttgtaagttagttatccaagttacaaactgttgtagctttgtcaacgacagaagctaagtacatggcag |
2324326 |
T |
|
| Q |
201 |
ctactcaagcatgcaaggaagctatttggatgcaaaggttaatggaggaactcgggcacaagcaggaacaaattactgtgtattgtgatagtcagagtgc |
300 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||| |||||| |
|
|
| T |
2324325 |
ctacccaagcatgcaaggaagctatttggatgcaaaggttaatggaggaactcgggcacaagcaggagaaaatcactttgtattgtggcagtcag----- |
2324231 |
T |
|
| Q |
301 |
cttgcacattgcaaggaatccagcttttcattcaaggacgaaacacataggcgttcaatatcattttgttcgcgaagtagtagaggaaggaagcgtggat |
400 |
Q |
| |
|
|| ||||||||||||||||| |||||||||||| ||| || |||| | ||||| ||||||||||||||| ||||||||| |||| ||||| |||||| |
|
|
| T |
2324230 |
-gtggacattgcaaggaatccatcttttcattcaaagacaaagaacattgacgttc-atatcattttgttcgagaagtagtaaaggagggaagtgtggat |
2324133 |
T |
|
| Q |
401 |
atgcagaagattcacactaatgataacctagcagatgcaatgacaaagtcgatcaacactgacaagtttatatggtgtcgatcttcgtatggcctattgg |
500 |
Q |
| |
|
||||||||||| ||||| ||||||| ||||||||||| ||||||||| | ||||| || ||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
2324132 |
atgcagaagatccacaccaatgataccctagcagatgtgatgacaaagccaatcaatgctaccaagtttatatggtgtcgatcatcgtatggactattgg |
2324033 |
T |
|
| Q |
501 |
aaacgtagcaactggagttggcaaggtagagagactttgaatactcacaaaagtgactttaagtgggagattgtgaa |
577 |
Q |
| |
|
|||||||||||| || | ||||||||||||||| |||| | |||||||||||| ||||||||||||||||||||| |
|
|
| T |
2324032 |
aaacgtagcaacatgaatgggcaaggtagagagattttggaagctcacaaaagtggctttaagtgggagattgtgaa |
2323956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 483
Target Start/End: Complemental strand, 7505181 - 7504699
Alignment:
| Q |
1 |
aacctcaggtgttgcggtatgtttcggaggatcagagttaactgtcaggggttatgttgattcagattttgcaggtgatcatgataaaagaaaatctact |
100 |
Q |
| |
|
||||| || |||||| |||||||| |||||| || || | ||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
7505181 |
aaccttagatgttgcattatgtttcagaggattggaatttattgtcaaaggttatgttgattcagattttgcaggtgatcttgataaaagaagatctact |
7505082 |
T |
|
| Q |
101 |
actggttatgtgttcacgcttgcaggaggagcagtaagttggttgtccaagttacaaacggttgtagctctgtcaacgacagaagcggagtacatggcag |
200 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||||||| ||||| || |||||| || |||||||| || || |||||||| || || ||||||| |
|
|
| T |
7505081 |
actggttatgtgttcacacttgcaggaggagcggtaagttgattgtcaaaattacaatttgtcgtagctctatctactacagaagctgaatatatggcag |
7504982 |
T |
|
| Q |
201 |
ctactcaagcatgcaaggaagctatttggatgcaaaggttaatggaggaactcgggcacaagcaggaacaaattactgtgtattgtgatagtcagagtgc |
300 |
Q |
| |
|
|||| ||||| |||||||||||||||||||| ||||| ||||||| ||||||| ||||| || |||||||| |||||||||||| ||||||||||| |
|
|
| T |
7504981 |
ctacgcaagcttgcaaggaagctatttggatacaaagactaatggaagaactcgtgcacagtcaacaacaaattgttgtgtattgtgacagtcagagtgc |
7504882 |
T |
|
| Q |
301 |
cttgcacattgcaaggaatccagcttttcattcaaggacgaaacacataggcgttcaatatcattttgttcgcgaagtagtagaggaaggaagcgtggat |
400 |
Q |
| |
|
|||||||||||||||||||||| |||||||| || || |||||||||| |||||||| ||||||||||| ||||| |||||| |||| || || ||| |
|
|
| T |
7504881 |
attgcacattgcaaggaatccagtctttcattcgagaacaaaacacatagatgttcaataccattttgttcgagaagtggtagagaaagggagtgttgat |
7504782 |
T |
|
| Q |
401 |
atgcagaagattcacactaatgataacctagcagatgcaatgacaaagtcgatcaacactgacaagtttatatggtgtcgatc |
483 |
Q |
| |
|
||||| || |||||||| || || || ||||||||| ||||||||||| ||||| |||||||| |||| |||||||||||| |
|
|
| T |
7504781 |
atgcaaaaaattcacaccaaagacaatttagcagatgttatgacaaagtcaatcaatactgacaaatttacatggtgtcgatc |
7504699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 18 - 541
Target Start/End: Original strand, 22509836 - 22510357
Alignment:
| Q |
18 |
tatgtttcggaggatcagagttaactgtcaggggttatgttgattcagattttgcaggtgatcatgat--aaaagaaaatctactactggttatgtgttc |
115 |
Q |
| |
|
||||||||||||||||| ||||||| | ||| ||||||||||||||||||||| ||||||||||||| |||| || || ||||| ||||| ||| |
|
|
| T |
22509836 |
tatgtttcggaggatcaaagttaaccattaggtgttatgttgattcagattttgaaggtgatcatgattgaaaaaaatatatactattggtt-----ttc |
22509930 |
T |
|
| Q |
116 |
acgcttgcaggaggagcagtaagttggttgtccaagttacaaacggttgtagctctgtcaacgacagaagcggagtacatggcagc-tactcaagcatgc |
214 |
Q |
| |
|
|| ||| | |||||||||||| ||||||||||||||||| || |||| |||||||||||| | |||| || ||||||| || |||| | | ||| |
|
|
| T |
22509931 |
acatttgtaagaggagcagtaatttggttgtccaagttaccaattgttgaagctctgtcaacaagagaaattgaatacatggaagtatact-aggtttgc |
22510029 |
T |
|
| Q |
215 |
aaggaagctatttggatgcaaaggttaatggaggaactcgggcacaagcaggaacaaattactgtgtattgtgatagtcagagtgccttgcacattgcaa |
314 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| ||||||| | ||||||||||| ||||||||||||||||||||| |||||||||| ||| |
|
|
| T |
22510030 |
aaggaagctatttggatgataaggttaatggaggaactcgcgcacaagtatcaacaaattactttgtattgtgatagtcagagtgtcttgcacatttcaa |
22510129 |
T |
|
| Q |
315 |
ggaatccagcttttcattcaaggacgaaacacataggcgttcaatatcattttgttcgcgaagtagtagaggaaggaagcgtggatatgcagaagattca |
414 |
Q |
| |
|
| |||||| |||| |||| | ||||| |||| |||||||||||| |||||| || ||| || ||||| ||| |||||||||| ||||||||| |
|
|
| T |
22510130 |
gcaatccaactttgtattccaagacgatgcacaaaggcgttcaataccatttttttgtattagttgtggaggagggacatgtggatatgccgaagattca |
22510229 |
T |
|
| Q |
415 |
cactaatgataacctagcagatgcaatgacaaagtc-gatcaacactgacaagtttatatggtgtcgatcttcgtatggcctattggaaacgtagcaact |
513 |
Q |
| |
|
||| ||||||||| |||||||| |||| |||||| ||||| | ||| |||||||||||||||| ||| | ||||||||| |||| ||| ||| |
|
|
| T |
22510230 |
aactgatgataaccaagcagatgtgatgaaaaagtctaatcaatattgataagtttatatggtgtcaatccctctgtggcctattcaaaacatagaaaca |
22510329 |
T |
|
| Q |
514 |
ggagttggcaaggtagagagactttgaa |
541 |
Q |
| |
|
||||||||||||||||||| | |||||| |
|
|
| T |
22510330 |
ggagttggcaaggtagagatattttgaa |
22510357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 356 - 483
Target Start/End: Original strand, 37957033 - 37957160
Alignment:
| Q |
356 |
caatatcattttgttcgcgaagtagtagaggaaggaagcgtggatatgcagaagattcacactaatgataacctagcagatgcaatgacaaagtcgatca |
455 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||||||| ||||| ||||| ||||||||| ||| ||| |||||| || ||||||||||| || | |
|
|
| T |
37957033 |
caatatcattatgtttgcgaagtagtagaggaaggaagtgtggacatgcaatagattcacaataaagattgtctagcaagtgtgatgacaaagtcaatta |
37957132 |
T |
|
| Q |
456 |
acactgacaagtttatatggtgtcgatc |
483 |
Q |
| |
|
| ||| ||||||||||| |||||||| |
|
|
| T |
37957133 |
atggtgataagtttatatgatgtcgatc |
37957160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 545 - 582
Target Start/End: Complemental strand, 7504676 - 7504639
Alignment:
| Q |
545 |
tcacaaaagtgactttaagtgggagattgtgaacatgt |
582 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |||| |
|
|
| T |
7504676 |
tcacaaaagtaactttaagtgggagattgtgaagatgt |
7504639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 82; Significance: 2e-38; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 212 - 430
Target Start/End: Original strand, 34973589 - 34973809
Alignment:
| Q |
212 |
tgcaaggaagctatttggatgcaaaggttaatggaggaactcgggcacaagcaggaacaaattactgtgtattgtgatagtcagagtgccttgcacattg |
311 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| ||| | |||||||| || | |||| |||||||| ||| ||| | |||| ||||||||||| |
|
|
| T |
34973589 |
tgcaaggaagctgtttggatgcaaaggttaatggagggacttagacacaagcatcaagacattattgtgtattatgaaagttaaagtgtcttgcacattg |
34973688 |
T |
|
| Q |
312 |
caaggaatccagctttt--cattcaaggacgaaacacataggcgttcaatatcattttgttcgcgaagtagtagaggaaggaagcgtggatatgcagaag |
409 |
Q |
| |
|
| | |||||| ||||| |||||||||||||| || |||||| || ||||||||||| || | |||||||| || || |||| |||||||||| |||| |
|
|
| T |
34973689 |
tatgaaatccaacttttttcattcaaggacgaagcaaataggcatttaatatcattttatttgagaagtagtggaagagagaagtgtggatatgctgaag |
34973788 |
T |
|
| Q |
410 |
attcacactaatgataaccta |
430 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
34973789 |
attcacactaatgataaccta |
34973809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 216 - 405
Target Start/End: Complemental strand, 41413783 - 41413595
Alignment:
| Q |
216 |
aggaagctatttggatgcaaaggttaatggaggaactcgggcacaagcaggaacaaattactgtgtattgtgatagtcagagtgccttgcacattgcaag |
315 |
Q |
| |
|
|||||||||||| |||||||| |||||| ||||||||| |||| || ||||||||| ||| |||||||||||| |||||| ||||||||||||||| |
|
|
| T |
41413783 |
aggaagctattttgatgcaaatgttaattgaggaactcaaacacagacaataacaaattattgtatattgtgatagttagagtgtcttgcacattgcaag |
41413684 |
T |
|
| Q |
316 |
gaatccagcttttcattcaaggacgaaacacataggcgttcaatatcattttgttcgcgaagtagtagaggaaggaagcgtggatatgca |
405 |
Q |
| |
|
|||||||| || ||||||||||| | || |||||||||||||||||||||||| |||||| | || ||||||| ||||||||||| |
|
|
| T |
41413683 |
taatccagccttccattcaaggacaaggcatgtaggcgttcaatatcattttgttc-agaagtaatggatgaaggaaatgtggatatgca |
41413595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 34973433 - 34973530
Alignment:
| Q |
1 |
aacctcaggtgttgcggtatgtttcggaggatcagagttaactgtcaggggttatgttgattcagattttgcaggtgatcatgataaaagaaaatcta |
98 |
Q |
| |
|
||||||||||||||| |||| |||||||||||| | |||||||| ||||||||||| |||||||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
34973433 |
aacctcaggtgttgcaatatgattcggaggatcaaatttaactgttaggggttatgtcgattcagattttgcagatgatcataataaaagaaaatcta |
34973530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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