View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7350_low_51 (Length: 241)

Name: NF7350_low_51
Description: NF7350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7350_low_51
NF7350_low_51
[»] chr1 (18 HSPs)
chr1 (8-241)||(3544593-3544826)
chr1 (38-241)||(1248108-1248310)
chr1 (8-150)||(28358396-28358538)
chr1 (8-152)||(5809085-5809229)
chr1 (8-152)||(19014476-19014619)
chr1 (8-151)||(52691976-52692119)
chr1 (11-160)||(40563053-40563202)
chr1 (8-125)||(13867325-13867442)
chr1 (38-152)||(45795710-45795824)
chr1 (45-130)||(3074271-3074356)
chr1 (45-130)||(22191311-22191396)
chr1 (40-110)||(45270787-45270857)
chr1 (45-130)||(21405363-21405448)
chr1 (85-181)||(20987638-20987734)
chr1 (8-148)||(38070340-38070480)
chr1 (9-92)||(27393442-27393525)
chr1 (84-152)||(25504562-25504630)
chr1 (8-104)||(45795827-45795923)
[»] chr6 (19 HSPs)
chr6 (8-241)||(14843629-14843862)
chr6 (8-151)||(19350449-19350592)
chr6 (8-154)||(32186185-32186331)
chr6 (8-151)||(29976500-29976650)
chr6 (8-151)||(14686500-14686643)
chr6 (8-202)||(25350676-25350870)
chr6 (40-125)||(10362664-10362749)
chr6 (10-154)||(26514226-26514370)
chr6 (8-151)||(13086044-13086187)
chr6 (12-145)||(7956167-7956299)
chr6 (45-130)||(29056045-29056130)
chr6 (9-93)||(10919957-10920041)
chr6 (38-111)||(1104469-1104542)
chr6 (8-93)||(34434823-34434908)
chr6 (40-93)||(900385-900438)
chr6 (84-148)||(11060430-11060494)
chr6 (90-154)||(13938221-13938285)
chr6 (84-152)||(17078758-17078826)
chr6 (84-152)||(18051017-18051085)
[»] chr5 (15 HSPs)
chr5 (8-241)||(476628-476861)
chr5 (8-195)||(380362-380549)
chr5 (8-152)||(42259784-42259928)
chr5 (66-152)||(22176376-22176462)
chr5 (42-152)||(42039231-42039341)
chr5 (45-109)||(41590643-41590707)
chr5 (42-109)||(29572398-29572465)
chr5 (42-109)||(29573775-29573842)
chr5 (42-109)||(29575152-29575219)
chr5 (42-109)||(29576529-29576596)
chr5 (42-109)||(29577906-29577973)
chr5 (42-109)||(29579283-29579350)
chr5 (40-109)||(4297833-4297902)
chr5 (84-152)||(19513033-19513101)
chr5 (90-154)||(33170160-33170224)
[»] scaffold0043 (1 HSPs)
scaffold0043 (10-241)||(34103-34334)
[»] chr3 (20 HSPs)
chr3 (8-241)||(31675346-31675579)
chr3 (8-241)||(31920843-31921076)
chr3 (8-151)||(19875748-19875891)
chr3 (8-110)||(25024336-25024438)
chr3 (8-151)||(53941808-53941951)
chr3 (8-151)||(55367115-55367258)
chr3 (40-125)||(52250648-52250733)
chr3 (8-152)||(40513216-40513360)
chr3 (8-110)||(48930272-48930374)
chr3 (63-151)||(14307713-14307801)
chr3 (8-152)||(34829904-34830041)
chr3 (40-109)||(6825369-6825438)
chr3 (71-148)||(35537276-35537353)
chr3 (39-148)||(46190000-46190109)
chr3 (9-104)||(18381610-18381705)
chr3 (48-130)||(31547897-31547980)
chr3 (8-66)||(42807259-42807317)
chr3 (45-130)||(44888430-44888515)
chr3 (90-154)||(962737-962801)
chr3 (84-152)||(14864033-14864101)
[»] chr7 (17 HSPs)
chr7 (8-151)||(27218614-27218757)
chr7 (8-148)||(19544894-19545034)
chr7 (9-152)||(17504052-17504195)
chr7 (9-152)||(17549019-17549162)
chr7 (8-110)||(11341342-11341444)
chr7 (21-195)||(20349425-20349598)
chr7 (42-148)||(34103985-34104091)
chr7 (45-93)||(8752925-8752973)
chr7 (45-125)||(25018847-25018927)
chr7 (45-130)||(17056055-17056140)
chr7 (72-152)||(23887588-23887667)
chr7 (72-152)||(23898764-23898843)
chr7 (45-135)||(22819246-22819336)
chr7 (40-81)||(41805282-41805323)
chr7 (42-93)||(23054497-23054548)
chr7 (47-100)||(39658919-39658972)
chr7 (41-93)||(12308647-12308699)
[»] chr4 (14 HSPs)
chr4 (45-241)||(2071955-2072151)
chr4 (8-151)||(9690927-9691070)
chr4 (8-152)||(43516240-43516384)
chr4 (58-148)||(52617407-52617497)
chr4 (39-152)||(7098986-7099099)
chr4 (45-148)||(36183045-36183148)
chr4 (9-148)||(56336993-56337132)
chr4 (40-104)||(38296258-38296322)
chr4 (84-152)||(49925835-49925903)
chr4 (8-184)||(55725198-55725374)
chr4 (45-130)||(9777896-9777981)
chr4 (40-97)||(29328301-29328358)
chr4 (69-110)||(41382519-41382560)
chr4 (84-152)||(19114940-19115008)
[»] chr2 (6 HSPs)
chr2 (8-151)||(6823916-6824059)
chr2 (8-152)||(11196855-11196999)
chr2 (40-125)||(43310790-43310875)
chr2 (40-110)||(26146761-26146831)
chr2 (40-124)||(10689087-10689170)
chr2 (84-152)||(15018181-15018249)
[»] scaffold0189 (1 HSPs)
scaffold0189 (39-151)||(6593-6705)
[»] chr8 (14 HSPs)
chr8 (8-154)||(25193590-25193736)
chr8 (45-159)||(29721439-29721553)
chr8 (8-148)||(15439632-15439765)
chr8 (8-148)||(15530936-15531069)
chr8 (11-152)||(6245593-6245727)
chr8 (8-151)||(36025026-36025169)
chr8 (45-148)||(37165650-37165753)
chr8 (40-109)||(36492928-36492997)
chr8 (43-93)||(12332411-12332461)
chr8 (45-151)||(12341072-12341178)
chr8 (8-130)||(18187672-18187794)
chr8 (84-152)||(6901413-6901481)
chr8 (84-148)||(17659339-17659403)
chr8 (84-152)||(36157658-36157726)
[»] scaffold0026 (1 HSPs)
scaffold0026 (42-125)||(67611-67694)
[»] scaffold0061 (1 HSPs)
scaffold0061 (40-110)||(55208-55278)
[»] scaffold0017 (1 HSPs)
scaffold0017 (40-110)||(143356-143426)
[»] scaffold0048 (1 HSPs)
scaffold0048 (8-93)||(63791-63876)
[»] scaffold0131 (1 HSPs)
scaffold0131 (8-55)||(4048-4095)
[»] scaffold0029 (1 HSPs)
scaffold0029 (8-55)||(134346-134393)
[»] scaffold0002 (2 HSPs)
scaffold0002 (8-55)||(312173-312220)
scaffold0002 (8-55)||(327627-327674)


Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-125; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 8 - 241
Target Start/End: Original strand, 3544593 - 3544826
Alignment:
Q  8 atggtgttggcgaatgttggtagatagcgatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgg 107  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3544593 atggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgg 3544692  T
Q  108 agtacttcatcttggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggtaggta 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3544693 agtacttcatcttggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggtaggta 3544792  T
Q  208 atggtgtgtctacttacttttggtatgacaggtg 241  Q
    |||| |||||||||||||||||||||||||||||    
T  3544793 atggcgtgtctacttacttttggtatgacaggtg 3544826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 38 - 241
Target Start/End: Original strand, 1248108 - 1248310
Alignment:
Q  38 tggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtg 137  Q
    |||||||||||||||| || |||| ||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||| ||||||||||    
T  1248108 tggtttttggtataggctgttggtggcgagatatggtgaggaggtagggaggttggaggtagggg-ctggagtacttcatcttggtggagggaagtagtg 1248206  T
Q  138 aagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggtaggtaatggtgtgtctacttacttttggtatgaca 237  Q
    ||||||||||||||| ||||||| | || |||||||||||||| |||| |||| ||||  |||||||| |||||  || |||||||||||||||||||||    
T  1248207 aagattagggatggggtgggtgaagctgcggggagttggtttgaggagagggtgtcgaagagggtagggaatggcttggctacttacttttggtatgaca 1248306  T
Q  238 ggtg 241  Q
    ||||    
T  1248307 ggtg 1248310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 8 - 150
Target Start/End: Complemental strand, 28358538 - 28358396
Alignment:
Q  8 atggtgttggcgaatgttggtagatagcgatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgg 107  Q
    |||||||||| || ||||||||||||| |  || |||||||| |||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  28358538 atggtgttggagattgttggtagatagaggcgggttttggtacagggtgttggtggcgagatatggtgaggaggcagggaggttggaggttgggggccgg 28358439  T
Q  108 agtacttcatcttggtggaaggaagtagtgaagattagggatg 150  Q
    |||   ||||||||||||| |||||||| ||||||||||||||    
T  28358438 agtgtctcatcttggtggagggaagtagcgaagattagggatg 28358396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 8 - 152
Target Start/End: Complemental strand, 5809229 - 5809085
Alignment:
Q  8 atggtgttggcgaatgttggtagatagcgatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgg 107  Q
    |||||||||||| |||||||| || |  | |||  | ||||||||||| || |||||| | ||||||| | |||  |||||||||||||| |||||||||    
T  5809229 atggtgttggcggatgttggtggacaaaggtgggctctggtatagggttcttgtagcgcggtatggtgtgaaggttgggaggttggaggttgggggccgg 5809130  T
Q  108 agtacttcatcttggtggaaggaagtagtgaagattagggatggg 152  Q
    |||  |||||||| |||| ||||||||||||||||||||||||||    
T  5809129 agtgtttcatcttagtggcaggaagtagtgaagattagggatggg 5809085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 8 - 152
Target Start/End: Original strand, 19014476 - 19014619
Alignment:
Q  8 atggtgttggcgaatgttggtagatagcgatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgg 107  Q
    |||| ||||||| |||||||| || || | ||| |||||||||   ||| |||| |||||||||||||||||| ||||||||||||||||  ||||||||    
T  19014476 atggagttggcggatgttggtggacagaggtgggttttggtattaagtgttggtggcgagatatggtgaggagacagggaggttggaggt-tggggccgg 19014574  T
Q  108 agtacttcatcttggtggaaggaagtagtgaagattagggatggg 152  Q
    |||  ||| |||||||||| |||  ||||||||||||||||||||    
T  19014575 agtgtttcttcttggtggagggagatagtgaagattagggatggg 19014619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 8 - 151
Target Start/End: Complemental strand, 52692119 - 52691976
Alignment:
Q  8 atggtgttggcgaatgttggtagatagcgatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgg 107  Q
    |||||||||| | |||||||| ||||| || || || |||||||||||| |||| ||| | |||||||||||||| |||||||||| ||||| ||| |||    
T  52692119 atggtgttggaggatgttggtggatagagaggggttctggtatagggtgttggtggcgcggtatggtgaggaggctgggaggttggtggtagagggtcgg 52692020  T
Q  108 agtacttcatcttggtggaaggaagtagtgaagattagggatgg 151  Q
    |||  ||| |||||||||| |||  ||| |||||||| ||||||    
T  52692019 agtgattcttcttggtggagggagatagcgaagattaaggatgg 52691976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 11 - 160
Target Start/End: Original strand, 40563053 - 40563202
Alignment:
Q  11 gtgttggcgaatgttggtagatagcgatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagt 110  Q
    ||||||| | |||||||| ||||| || || || |||||||| ||  |||| ||||||||||| || ||||||| |||||||||||| |||||||||| |    
T  40563053 gtgttggaggatgttggtggatagagacgggttgtggtatagagttttggtggcgagatatggagatgaggcagagaggttggaggttgggggccggact 40563152  T
Q  111 acttcatcttggtggaaggaagtagtgaagattagggatgggatgggtga 160  Q
      ||||||||||||||  ||  ||| |||||||||||||||  |||||||    
T  40563153 gtttcatcttggtggagagagatagcgaagattagggatggagtgggtga 40563202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 125
Target Start/End: Original strand, 13867325 - 13867442
Alignment:
Q  8 atggtgttggcgaatgttggtagatagcgatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgg 107  Q
    |||||||||||| |||||||| ||||| | |||||| ||||||||||| ||||||||  | |||||||||  ||| ||| |||||||||| |||||| ||    
T  13867325 atggtgttggcggatgttggtggatagaggtggtttatggtatagggtcctggtagctcggtatggtgagacggctgggcggttggaggttgggggcagg 13867424  T
Q  108 agtacttcatcttggtgg 125  Q
    |||  |||||| ||||||    
T  13867425 agtgtttcatcgtggtgg 13867442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 38 - 152
Target Start/End: Complemental strand, 45795824 - 45795710
Alignment:
Q  38 tggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtg 137  Q
    |||||| ||||||| ||| ||||||||  | |||||||||  ||  ||| |||||||||| |||||| |||||  |||||||||||||  |||||||| |    
T  45795824 tggtttatggtataaggtcctggtagcacggtatggtgagacggttgggcggttggaggttgggggcaggagtgtttcatcttggtggcgggaagtagcg 45795725  T
Q  138 aagattagggatggg 152  Q
    |||||||||||||||    
T  45795724 aagattagggatggg 45795710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 130
Target Start/End: Complemental strand, 3074356 - 3074271
Alignment:
Q  45 tggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaagga 130  Q
    |||||||||||| |||||||| | |||||||||||||  |||||||||| ||| |||| |||||||  ||| || |||||||||||    
T  3074356 tggtatagggtgttggtagcgcgttatggtgaggaggatgggaggttggcggttggggaccggagtgtttcttcgtggtggaagga 3074271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 130
Target Start/End: Original strand, 22191311 - 22191396
Alignment:
Q  45 tggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaagga 130  Q
    |||||||||||| |||| ||| | |||||||||||||  |||||||||| ||| ||||||||||||  ||| || |||||||||||    
T  22191311 tggtatagggtgttggtggcgtgttatggtgaggaggatgggaggttggtggttgggggccggagtgtttcttcgtggtggaagga 22191396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 40 - 110
Target Start/End: Complemental strand, 45270857 - 45270787
Alignment:
Q  40 gtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagt 110  Q
    |||| ||||||||| |  |||| |||||||||| ||||||||  |||||||||||||| ||||||||||||    
T  45270857 gtttatggtataggattttggtggcgagatatgatgaggaggatgggaggttggaggttgggggccggagt 45270787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 130
Target Start/End: Complemental strand, 21405448 - 21405363
Alignment:
Q  45 tggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaagga 130  Q
    |||||||||||| |||||||  | |||||||||||||  |||||||||| ||| ||||||| ||||  ||| || |||||||||||    
T  21405448 tggtatagggtgttggtagcacgttatggtgaggaggatgggaggttggtggttgggggccagagtgtttcttcgtggtggaagga 21405363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 181
Target Start/End: Complemental strand, 20987734 - 20987638
Alignment:
Q  85 ggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgc 181  Q
    |||||||||||||||||||| |||||  |||   |||||||| |||  ||| |||||||||||||||||| || ||   ||||| ||||||||||||    
T  20987734 ggaggttggaggtagggggcaggagtggttctctttggtggagggagatagcgaagattagggatgggataggcgattctgaggagagttggtttgc 20987638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 148
Target Start/End: Complemental strand, 38070480 - 38070340
Alignment:
Q  8 atggtgttggcgaatgttggtagatagcgatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgg 107  Q
    ||||||||||||  ||||||| ||||| |  || || |||||||| ||  |||| || || |||||||||||||| ||| |||||||||| ||||| |||    
T  38070480 atggtgttggcggttgttggtggatagaggagggttgtggtatagagttttggtggcaaggtatggtgaggaggctgggcggttggaggttgggggtcgg 38070381  T
Q  108 agtacttcatcttggtggaaggaagtagtgaagattaggga 148  Q
    |||  |||  |||||||||  ||  ||| ||||||||||||    
T  38070380 agtgtttctacttggtggagagagttagcgaagattaggga 38070340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 92
Target Start/End: Original strand, 27393442 - 27393525
Alignment:
Q  9 tggtgttggcgaatgttggtagatagcgatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttg 92  Q
    ||||||||| |  ||||||| ||||| |  ||||| ||||||| |||| |||| || || ||||||||||||||||||||||||    
T  27393442 tggtgttggaggttgttggttgatagaggaggtttatggtatatggtgttggttgctaggtatggtgaggaggcagggaggttg 27393525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 152
Target Start/End: Original strand, 25504562 - 25504630
Alignment:
Q  84 gggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagattagggatggg 152  Q
    |||||||||||||| ||||||| ||||  ||| |||||||||  ||| || | ||||||||||||||||    
T  25504562 gggaggttggaggttgggggccagagttgttcttcttggtggcgggaggttgggaagattagggatggg 25504630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 104
Target Start/End: Complemental strand, 45795923 - 45795827
Alignment:
Q  8 atggtgttggcgaatgttggtagatagcgatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggc 104  Q
    |||||||||||| |||||||| ||||  | |||||| ||||||| ||| ||||||||  | |||||||||  ||  ||| |||||||||| ||||||    
T  45795923 atggtgttggcggatgttggtggataaaggtggtttatggtataaggtcctggtagcacggtatggtgagacggttgggcggttggaggttgggggc 45795827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 218; Significance: 1e-120; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 8 - 241
Target Start/End: Original strand, 14843629 - 14843862
Alignment:
Q  8 atggtgttggcgaatgttggtagatagcgatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgg 107  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||    
T  14843629 atggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggagacagggaggttggaggtagggggacgg 14843728  T
Q  108 agtacttcatcttggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggtaggta 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14843729 agtacttcatcttggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggtaggta 14843828  T
Q  208 atggtgtgtctacttacttttggtatgacaggtg 241  Q
    |||| |||||||||||||||||||||||||||||    
T  14843829 atggcgtgtctacttacttttggtatgacaggtg 14843862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 8 - 151
Target Start/End: Complemental strand, 19350592 - 19350449
Alignment:
Q  8 atggtgttggcgaatgttggtagatagcgatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgg 107  Q
    ||||||||||||  ||||| ||||||| | ||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  19350592 atggtgttggcggttgttgatagatagaggtgggttttggtatagggtgttggtggcgagatatggtgaggaggcagggaggttggaggttgggggccgg 19350493  T
Q  108 agtacttcatcttggtggaaggaagtagtgaagattagggatgg 151  Q
    |||   ||||||||||||||||| |||| |||||||||||||||    
T  19350492 agtgtatcatcttggtggaaggaggtagcgaagattagggatgg 19350449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 8 - 154
Target Start/End: Complemental strand, 32186331 - 32186185
Alignment:
Q  8 atggtgttggcgaatgttggtagatagcgatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgg 107  Q
    |||||||||||   ||||||| ||||| | ||| ||||||||||||||| |||| ||||||||| |||||| ||| |||||||||||||| |||||||||    
T  32186331 atggtgttggcagttgttggtggatagaggtgggttttggtatagggtgttggtggcgagatatagtgaggtggctgggaggttggaggttgggggccgg 32186232  T
Q  108 agtacttcatcttggtggaaggaagtagtgaagattagggatgggat 154  Q
    ||| |||| |||||||||| ||| |||||||||||||||||||||||    
T  32186231 agtgcttcttcttggtggagggaggtagtgaagattagggatgggat 32186185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 8 - 151
Target Start/End: Original strand, 29976500 - 29976650
Alignment:
Q  8 atggtgttggcgaatgttggtagatagcgatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttgga-------ggtagg 100  Q
    |||| |||||||  ||||| ||||||| | ||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||       ||| ||    
T  29976500 atggcgttggcggttgttgatagatagaggtgggttttggtatagggtgttggtggcgagatatggtgaggaggcagggaggttggaggttgggggttgg 29976599  T
Q  101 gggccggagtacttcatcttggtggaaggaagtagtgaagattagggatgg 151  Q
    ||||||||||   ||||||||||||||||| |||| |||||||||||||||    
T  29976600 gggccggagtgtatcatcttggtggaaggaggtagcgaagattagggatgg 29976650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 8 - 151
Target Start/End: Original strand, 14686500 - 14686643
Alignment:
Q  8 atggtgttggcgaatgttggtagatagcgatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgg 107  Q
    |||||||||||| |||||||| ||||| |  || |||||||||||||| ||||||||| | ||||| |||  ||  ||| ||||||||||||||||||||    
T  14686500 atggtgttggcggatgttggtggatagaggcggattttggtatagggtcctggtagcgcggtatggggagacggttgggcggttggaggtagggggccgg 14686599  T
Q  108 agtacttcatcttggtggaaggaagtagtgaagattagggatgg 151  Q
    |||  ||||||||||||||  ||||||| |||||||||||||||    
T  14686600 agtgtttcatcttggtggagagaagtagcgaagattagggatgg 14686643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 8 - 202
Target Start/End: Complemental strand, 25350870 - 25350676
Alignment:
Q  8 atggtgttggcgaatgttggtagatagcgatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgg 107  Q
    ||||| |||| | |||||||| ||||| ||||| || |||||||||||| |||| ||| | |||||||||||||| |||||||||| |||||||||||||    
T  25350870 atggttttggaggatgttggtggatagagatgggttctggtatagggtgttggtggcgcggtatggtgaggaggctgggaggttggtggtagggggccgg 25350771  T
Q  108 agtacttcatcttggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggt 202  Q
    |||  ||| | ||||| || |||  ||| ||||||||||||||| || || |||   || ||| |||||||||| ||| |||| |||| ||||||    
T  25350770 agtgattctttttggttgagggagatagcgaagattagggatggaataggagacacggatgggggttggtttgcagagagggtgtcgaaaagggt 25350676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 40 - 125
Target Start/End: Complemental strand, 10362749 - 10362664
Alignment:
Q  40 gtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtgg 125  Q
    |||| |||||||||||  |||| |||||||||||||||||||  |||||||||||||| ||||||||||||  ||| |||||||||    
T  10362749 gtttatggtatagggttttggtggcgagatatggtgaggaggatgggaggttggaggtggggggccggagtggttcttcttggtgg 10362664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 10 - 154
Target Start/End: Complemental strand, 26514370 - 26514226
Alignment:
Q  10 ggtgttggcgaatgttggtagatagcgatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggag 109  Q
    |||||||| | ||| |||| ||||| || || || |||||||| ||| |||| ||  | |||||||||||||||||||| |||||||| |||||||||||    
T  26514370 ggtgttggaggatgctggtggatagagaggggttctggtatagagtgttggtggctcggtatggtgaggaggcagggagtttggaggttgggggccggag 26514271  T
Q  110 tacttcatcttggtggaaggaagtagtgaagattagggatgggat 154  Q
    |  |||   |||||||| |||  ||| ||||||||||||||||||    
T  26514270 tggttctatttggtggagggagatagcgaagattagggatgggat 26514226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 8 - 151
Target Start/End: Complemental strand, 13086187 - 13086044
Alignment:
Q  8 atggtgttggcgaatgttggtagatagcgatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgg 107  Q
    |||||||||| | |||||||||||||| |  ||||| |||||||| || || || ||  | ||||| ||||  | ||||||||||||||| |||||||||    
T  13086187 atggtgttggaggatgttggtagatagagtaggtttgtggtatagtgttctagtcgcccgttatggcgaggttggagggaggttggaggttgggggccgg 13086088  T
Q  108 agtacttcatcttggtggaaggaagtagtgaagattagggatgg 151  Q
    |||  ||| | |||||||||||| |||| || |||||| |||||    
T  13086087 agttgttctttttggtggaaggaggtagggaggattagagatgg 13086044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 145
Target Start/End: Original strand, 7956167 - 7956299
Alignment:
Q  12 tgttggcgaatgttggtagatagcgatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagta 111  Q
    |||||||| ||||| || ||||| |||||| |||||||| | ||| |||| || ||||||||||||||||  ||||||||||||| | | |||||||||     
T  7956167 tgttggcgtatgttagttgatagagatggtctttggtatcgagtgttggtggctagatatggtgaggaggacgggaggttggagg-atgaggccggagtg 7956265  T
Q  112 cttcatcttggtggaaggaagtagtgaagattag 145  Q
     ||| |  ||||||||| | || |||||||||||    
T  7956266 gttctttatggtggaagaaggttgtgaagattag 7956299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 130
Target Start/End: Complemental strand, 29056130 - 29056045
Alignment:
Q  45 tggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaagga 130  Q
    |||||||||||| |||||||  | |||||||||||||  |||||||||| ||| ||||||||||||  ||| || |||||||||||    
T  29056130 tggtatagggtgttggtagcacgttatggtgaggaggatgggaggttggcggttgggggccggagtgtttcttcgtggtggaagga 29056045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 93
Target Start/End: Original strand, 10919957 - 10920041
Alignment:
Q  9 tggtgttggcgaatgttggtagatagcgatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttgg 93  Q
    ||||||||| | |||||||| ||||| |  || ||||||||||||||| |||| || || |||||||||||||| ||||||||||    
T  10919957 tggtgttggaggatgttggttgatagaggggggttttggtatagggtgttggttgctaggtatggtgaggaggcggggaggttgg 10920041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 111
Target Start/End: Original strand, 1104469 - 1104542
Alignment:
Q  38 tggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagta 111  Q
    |||||| |||||||||||| |||| ||  | |||||||||||||||| |||||||| ||| ||||||| |||||    
T  1104469 tggtttgtggtatagggtgatggttgctcgttatggtgaggaggcagtgaggttggtggttgggggcctgagta 1104542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 93
Target Start/End: Complemental strand, 34434908 - 34434823
Alignment:
Q  8 atggtgttggcgaatgttggtagatagcgatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttgg 93  Q
    |||||||||||| ||||||||||| ||   | || | |||||||||||  |||| |||||||||||||||||||  ||||||||||    
T  34434908 atggtgttggcggatgttggtagagaggagtagtatatggtatagggttttggtggcgagatatggtgaggaggatgggaggttgg 34434823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 93
Target Start/End: Original strand, 900385 - 900438
Alignment:
Q  40 gtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttgg 93  Q
    ||||||||||||||||| |||  || || || ||||||||||||||||||||||    
T  900385 gtttttggtatagggtgttggctgctaggtacggtgaggaggcagggaggttgg 900438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 148
Target Start/End: Original strand, 11060430 - 11060494
Alignment:
Q  84 gggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagattaggga 148  Q
    |||||||||||||| ||||||||||||  ||| |||||||||| ||| |||| |  |||||||||    
T  11060430 gggaggttggaggttgggggccggagttgttcttcttggtggagggaggtagggcggattaggga 11060494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 154
Target Start/End: Complemental strand, 13938285 - 13938221
Alignment:
Q  90 ttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagattagggatgggat 154  Q
    |||||||  ||||||||||||  ||||||||||||| ||||  |||||| |||||| ||||||||    
T  13938285 ttggaggatgggggccggagttgttcatcttggtggcaggagatagtgaggattagagatgggat 13938221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 152
Target Start/End: Original strand, 17078758 - 17078826
Alignment:
Q  84 gggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagattagggatggg 152  Q
    |||||||||||||| ||||||||||||  ||| |||||||||| ||| |||| |  |||||| ||||||    
T  17078758 gggaggttggaggttgggggccggagttgttcttcttggtggagggaggtagggcggattagagatggg 17078826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 152
Target Start/End: Original strand, 18051017 - 18051085
Alignment:
Q  84 gggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagattagggatggg 152  Q
    |||||||||||||| ||||||||||||  ||| |||||||||| ||| |||| |  |||||| ||||||    
T  18051017 gggaggttggaggttgggggccggagttgttcttcttggtggagggaggtagggcggattagagatggg 18051085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 8 - 241
Target Start/End: Complemental strand, 476861 - 476628
Alignment:
Q  8 atggtgttggcgaatgttggtagatagcgatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgg 107  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  476861 atggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgg 476762  T
Q  108 agtacttcatcttggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggtaggta 207  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  476761 agtacttcatcttggtggaaggaagtagtgaagattagggacgggatgggtgacgctgaggggagttggtttgcggagcgggtttcgagaagggtaggta 476662  T
Q  208 atggtgtgtctacttacttttggtatgacaggtg 241  Q
    |||| |||||||||||||||||||||||||||||    
T  476661 atggcgtgtctacttacttttggtatgacaggtg 476628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 8 - 195
Target Start/End: Complemental strand, 380549 - 380362
Alignment:
Q  8 atggtgttggcgaatgttggtagatagcgatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgg 107  Q
    |||||||||||| |||||||| ||||| |||||||| |||||||||||||||| |||| | ||||||||||||||||||||||||||||| |||||||||    
T  380549 atggtgttggcggatgttggtggatagagatggtttctggtatagggtgctggaagcgcggtatggtgaggaggcagggaggttggaggttgggggccgg 380450  T
Q  108 agtacttcatcttggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcga 195  Q
    |||  ||| ||||||| ||||||| |||||||||||||||| ||| | || || | ||||||| | |||||||||||| |||| ||||    
T  380449 agtggttcttcttggtagaaggaaatagtgaagattagggacgggttaggagaaggtgaggggggctggtttgcggagagggtgtcga 380362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 8 - 152
Target Start/End: Complemental strand, 42259928 - 42259784
Alignment:
Q  8 atggtgttggcgaatgttggtagatagcgatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgg 107  Q
    ||||||||| || |||||||| ||||| | ||| |||||||||| |||| | || | ||||||| |||||| ||| ||||| |||||||| ||| |||||    
T  42259928 atggtgttgacggatgttggtggatagaggtgggttttggtataaggtgtttgtggagagatatcgtgaggtggctgggagtttggaggttgggagccgg 42259829  T
Q  108 agtacttcatcttggtggaaggaagtagtgaagattagggatggg 152  Q
    ||| |||| |||||||||| ||| |||||||||||||||||||||    
T  42259828 agtgcttcttcttggtggagggaggtagtgaagattagggatggg 42259784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 66 - 152
Target Start/End: Original strand, 22176376 - 22176462
Alignment:
Q  66 agatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagattagggatggg 152  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||   || ||||||||||||||| ||| ||||||||||||||||    
T  22176376 agatatggtgaggaggcagggaggttggcggttgggggccggagtgtctcttcttggtggaaggaaatagcgaagattagggatggg 22176462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 42 - 152
Target Start/End: Original strand, 42039231 - 42039341
Alignment:
Q  42 ttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaaga 141  Q
    ||||||||||||||| |||| |||| ||||||||||| ||  ||| |||||||||  |||||||||||| |||  |||||||||| |||  || ||||||    
T  42039231 ttttggtatagggtgttggtggcgaaatatggtgaggtggttgggcggttggaggatgggggccggagtgctttttcttggtggagggagttaatgaaga 42039330  T
Q  142 ttagggatggg 152  Q
    |||||||||||    
T  42039331 ttagggatggg 42039341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 45 - 109
Target Start/End: Complemental strand, 41590707 - 41590643
Alignment:
Q  45 tggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggag 109  Q
    |||||||||||| |||| ||||| |||||||||||||  |||||||||| ||| |||||||||||    
T  41590707 tggtatagggtgttggtggcgaggtatggtgaggaggatgggaggttggcggttgggggccggag 41590643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 109
Target Start/End: Original strand, 29572398 - 29572465
Alignment:
Q  42 ttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggag 109  Q
    |||||||| |||||| |||  || || |||||||||||||||| |||||||||||| |||||||||||    
T  29572398 ttttggtaaagggtgttggctgctaggtatggtgaggaggcagagaggttggaggttgggggccggag 29572465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 109
Target Start/End: Original strand, 29573775 - 29573842
Alignment:
Q  42 ttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggag 109  Q
    |||||||| |||||| |||  || || |||||||||||||||| |||||||||||| |||||||||||    
T  29573775 ttttggtaaagggtgttggctgctaggtatggtgaggaggcagagaggttggaggttgggggccggag 29573842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 109
Target Start/End: Original strand, 29575152 - 29575219
Alignment:
Q  42 ttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggag 109  Q
    |||||||| |||||| |||  || || |||||||||||||||| |||||||||||| |||||||||||    
T  29575152 ttttggtaaagggtgttggctgctaggtatggtgaggaggcagagaggttggaggttgggggccggag 29575219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 109
Target Start/End: Original strand, 29576529 - 29576596
Alignment:
Q  42 ttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggag 109  Q
    |||||||| |||||| |||  || || |||||||||||||||| |||||||||||| |||||||||||    
T  29576529 ttttggtaaagggtgttggctgctaggtatggtgaggaggcagagaggttggaggttgggggccggag 29576596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 109
Target Start/End: Original strand, 29577906 - 29577973
Alignment:
Q  42 ttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggag 109  Q
    |||||||| |||||| |||  || || |||||||||||||||| |||||||||||| |||||||||||    
T  29577906 ttttggtaaagggtgttggctgctaggtatggtgaggaggcagagaggttggaggttgggggccggag 29577973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 109
Target Start/End: Original strand, 29579283 - 29579350
Alignment:
Q  42 ttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggag 109  Q
    |||||||| |||||| |||  || || |||||||||||||||| |||||||||||| |||||||||||    
T  29579283 ttttggtaaagggtgttggctgctaggtatggtgaggaggcagagaggttggaggttgggggccggag 29579350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 109
Target Start/End: Original strand, 4297833 - 4297902
Alignment:
Q  40 gtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggag 109  Q
    |||| |||||||||||| |||| ||||| |||||||||||||  |||||||||| ||| |||| ||||||    
T  4297833 gtttatggtatagggtgttggtggcgaggtatggtgaggaggatgggaggttggcggttggggcccggag 4297902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 152
Target Start/End: Original strand, 19513033 - 19513101
Alignment:
Q  84 gggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagattagggatggg 152  Q
    |||||||||||||| ||||||||||||  ||| |||||||||| ||| |||| || |||| | ||||||    
T  19513033 gggaggttggaggtggggggccggagttgttcttcttggtggagggaggtagggaggattcgagatggg 19513101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 154
Target Start/End: Complemental strand, 33170224 - 33170160
Alignment:
Q  90 ttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagattagggatgggat 154  Q
    |||||||  ||||||||||||  |||||||||||||  |||  |||||| |||||||||||||||    
T  33170224 ttggaggatgggggccggagttgttcatcttggtggcgggagatagtgaggattagggatgggat 33170160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 10 - 241
Target Start/End: Original strand, 34103 - 34334
Alignment:
Q  10 ggtgttggcgaatgttggtagatagcgatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggag 109  Q
    |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  34103 ggtgttggcgaatgttggtagagagagatggtttttggtatagggtgctggtagcgagatatggtgaggagacagggaggttggaggtagggggccggag 34202  T
Q  110 tacttcatcttggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggtaggtaat 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  34203 tacttcatcttggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagaataggtaat 34302  T
Q  210 ggtgtgtctacttacttttggtatgacaggtg 241  Q
    || |||||||||||||||||||||||||||||    
T  34303 ggcgtgtctacttacttttggtatgacaggtg 34334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 178; Significance: 4e-96; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 8 - 241
Target Start/End: Complemental strand, 31675579 - 31675346
Alignment:
Q  8 atggtgttggcgaatgttggtagatagcgatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgg 107  Q
    ||||||||||||||||||||| ||||| | |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  31675579 atggtgttggcgaatgttggtggatagaggtggtttttggtatagggtgctggtggtgagatatggtgaggaggcagggaggttggaggtagggggccgg 31675480  T
Q  108 agtacttcatcttggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggtaggta 207  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||  ||||||||||||||||||| ||||||||||||||| | ||||||||    
T  31675479 agtacttcatcttggtggaaggaagtagtgaagattagggacgggatgggtgtagatgaggggagttggtttgaggagcgggtttcgaggaaggtaggta 31675380  T
Q  208 atggtgtgtctacttacttttggtatgacaggtg 241  Q
    |||| | ||||||||||||||||||||| |||||    
T  31675379 atggcgcgtctacttacttttggtatgataggtg 31675346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 8 - 241
Target Start/End: Original strand, 31920843 - 31921076
Alignment:
Q  8 atggtgttggcgaatgttggtagatagcgatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgg 107  Q
    ||||||||||||||||||||| ||||| | |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  31920843 atggtgttggcgaatgttggtggatagaggtggtttttggtatagggtgctggtggtgagatatggtgaggaggcagggaggttggaggtagggggccgg 31920942  T
Q  108 agtacttcatcttggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggtaggta 207  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||||||  ||||||||||||||||||| |||| |||||||||| | ||||||||    
T  31920943 agtacttcatcttggtagaaggaagtagtgaagattagggacgggatgggtgtagatgaggggagttggtttgaggagtgggtttcgaggaaggtaggta 31921042  T
Q  208 atggtgtgtctacttacttttggtatgacaggtg 241  Q
    |||| | ||||||||||||||||||||| |||||    
T  31921043 atggcgcgtctacttacttttggtatgataggtg 31921076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 8 - 151
Target Start/End: Complemental strand, 19875891 - 19875748
Alignment:
Q  8 atggtgttggcgaatgttggtagatagcgatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgg 107  Q
    ||||||||||||  ||||| ||||||| | ||| ||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||| |||||||||    
T  19875891 atggtgttggcggttgttgatagatagaggtgggttttggtatagggtgttggtggcgagatatggtgaggaggcaaggaggttggaggttgggggccgg 19875792  T
Q  108 agtacttcatcttggtggaaggaagtagtgaagattagggatgg 151  Q
    |||   ||||||||||||||||| |||| |||||||| ||||||    
T  19875791 agtgtatcatcttggtggaaggaggtagcgaagattaaggatgg 19875748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 8 - 110
Target Start/End: Original strand, 25024336 - 25024438
Alignment:
Q  8 atggtgttggcgaatgttggtagatagcgatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgg 107  Q
    |||||||||| | ||||| || ||||| ||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||| ||| ||||| |||    
T  25024336 atggtgttggaggatgttagtggatagagatggtttttggtatagggtgttggaagctagatatggtgaggaggcagggaggttggcggttgggggtcgg 25024435  T
Q  108 agt 110  Q
    |||    
T  25024436 agt 25024438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 8 - 151
Target Start/End: Complemental strand, 53941951 - 53941808
Alignment:
Q  8 atggtgttggcgaatgttggtagatagcgatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgg 107  Q
    |||||||||| | |||||||| ||||| || || || ||||||| |||| |||| ||| | |||||||||||||| |||||||||| |||||||||||||    
T  53941951 atggtgttggaggatgttggtggatagagaggggttctggtataaggtgttggtggcgcggtatggtgaggaggctgggaggttggtggtagggggccgg 53941852  T
Q  108 agtacttcatcttggtggaaggaagtagtgaagattagggatgg 151  Q
    |||  ||| | || ||||| |||  ||| |||||||||||||||    
T  53941851 agtgattctttttagtggagggagatagcgaagattagggatgg 53941808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 8 - 151
Target Start/End: Complemental strand, 55367258 - 55367115
Alignment:
Q  8 atggtgttggcgaatgttggtagatagcgatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgg 107  Q
    |||||||||| | ||||| || ||||| | ||| || ||||||| |||  || |||||||||||||||||||||||| ||||||||||||||||||||||    
T  55367258 atggtgttggaggatgttagttgatagaggtgggttgtggtataaggttttgttagcgagatatggtgaggaggcagagaggttggaggtagggggccgg 55367159  T
Q  108 agtacttcatcttggtggaaggaagtagtgaagattagggatgg 151  Q
    |||  ||| | |||||||| |||  ||  ||||||||| |||||    
T  55367158 agtgattccttttggtggatggagataacgaagattagagatgg 55367115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 40 - 125
Target Start/End: Original strand, 52250648 - 52250733
Alignment:
Q  40 gtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtgg 125  Q
    |||| |||||||||||| |||| |||||||||||||||||||  |||||||||||||| ||||||||||||  ||| |||||||||    
T  52250648 gtttatggtatagggtgttggtggcgagatatggtgaggaggatgggaggttggaggttgggggccggagtggttcttcttggtgg 52250733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 8 - 152
Target Start/End: Original strand, 40513216 - 40513360
Alignment:
Q  8 atggtgttggcgaatgttggtagatagcgatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgg 107  Q
    |||||||||||| |||||||| ||||| | |||||| ||||||||||| ||||||||  | |||||||||  ||| ||| |||||||||| |||||| ||    
T  40513216 atggtgttggcggatgttggtggatagaggtggtttatggtatagggtcctggtagctcggtatggtgagacggctgggcggttggaggttgggggcagg 40513315  T
Q  108 agtacttcatcttggtggaaggaagtagtgaagattagggatggg 152  Q
    |||  |||| | ||||||  |||| |||  |||||||||||||||    
T  40513316 agtgtttcaccgtggtggcgggaattagcaaagattagggatggg 40513360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 8 - 110
Target Start/End: Complemental strand, 48930374 - 48930272
Alignment:
Q  8 atggtgttggcgaatgttggtagatagcgatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgg 107  Q
    ||||||||||||  |||||||||| ||  || |||| |||||||||||  |||| |||||||||||||||||||  |||||||||||||| |||||| ||    
T  48930374 atggtgttggcggctgttggtagagaggaatagtttatggtatagggttttggtggcgagatatggtgaggaggatgggaggttggaggttgggggctgg 48930275  T
Q  108 agt 110  Q
    |||    
T  48930274 agt 48930272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 63 - 151
Target Start/End: Complemental strand, 14307801 - 14307713
Alignment:
Q  63 gcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagattagggatgg 151  Q
    |||||||||||||||||||||||||| |||||| | ||||||||||||   ||| ||||||||| |||  ||| |||||||||||||||    
T  14307801 gcgagatatggtgaggaggcagggagattggagtttgggggccggagtgtgtcaccttggtggagggagatagcgaagattagggatgg 14307713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 152
Target Start/End: Complemental strand, 34830041 - 34829904
Alignment:
Q  8 atggtgttggcgaatgttggtagatagcgatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgg 107  Q
    |||||||||||| |||||||| ||||  | ||| || ||||||||||| |||| |||| ||||||||||| |       || | |||||| |||| ||||    
T  34830041 atggtgttggcggatgttggtggatatagttgggttatggtatagggtactggcagcgcgatatggtgagaa-------agatgggaggttggggcccgg 34829949  T
Q  108 agtacttcatcttggtggaaggaagtagtgaagattagggatggg 152  Q
    |||  |||||||||||||   ||||||| ||||||||||||||||    
T  34829948 agtgtttcatcttggtggtgtgaagtagcgaagattagggatggg 34829904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 109
Target Start/End: Complemental strand, 6825438 - 6825369
Alignment:
Q  40 gtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggag 109  Q
    |||| |||||||||||| |||| ||| | |||||||||||||  |||||||||| ||| |||||||||||    
T  6825438 gtttatggtatagggtgttggtggcgcggtatggtgaggaggatgggaggttggcggttgggggccggag 6825369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 148
Target Start/End: Complemental strand, 35537353 - 35537276
Alignment:
Q  71 tggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagattaggga 148  Q
    ||||||||||||| |||| |||||||| ||||||||||||  ||| | |||||||| ||| || |||| |||||||||    
T  35537353 tggtgaggaggcaaggagattggaggttgggggccggagtgattcttattggtggagggaggtggtgaggattaggga 35537276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 148
Target Start/End: Complemental strand, 46190109 - 46190000
Alignment:
Q  39 ggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtga 138  Q
    ||||| ||||| |||||  |||| ||||| |||||||||||||| | | |||||||||| ||||||||||||  |||   ||| |||| ||| |||| ||    
T  46190109 ggtttgtggtacagggtattggtggcgaggtatggtgaggaggctgagcggttggaggttgggggccggagtgtttctaattgatggagggaggtagcga 46190010  T
Q  139 agattaggga 148  Q
    ||||||||||    
T  46190009 agattaggga 46190000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 104
Target Start/End: Complemental strand, 18381705 - 18381610
Alignment:
Q  9 tggtgttggcgaatgttggtagatagcgatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggc 104  Q
    ||||||||| |||||||||| ||||| |  || || |||||| ||||  |||| |||||||||||||| ||||  || |||||||| |||||||||    
T  18381705 tggtgttggagaatgttggttgatagaggagggttatggtattgggttttggtggcgagatatggtgacgaggatggaaggttggatgtagggggc 18381610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 130
Target Start/End: Complemental strand, 31547980 - 31547897
Alignment:
Q  48 tatagggtgctggtagcgagatatggtgaggaggcagggaggttggagg-tagggggccggagtacttcatcttggtggaagga 130  Q
    ||||||||| |||||||| | |||||||||||||  |||||||||| || | ||||||||||||  ||| || |||||||||||    
T  31547980 tatagggtgttggtagcgcgttatggtgaggaggatgggaggttggtggttggggggccggagtgtttcttcgtggtggaagga 31547897  T

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Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 42807317 - 42807259
Alignment:
Q  8 atggtgttggcgaatgttggtagatagcgatggtttttggtatagggtgctggtagcga 66  Q
    |||||||||||| |||||||||||||| ||| |||| |||| ||||||| |||| ||||    
T  42807317 atggtgttggcggatgttggtagatagggatagtttatggtttagggtgttggtggcga 42807259  T

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Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 130
Target Start/End: Complemental strand, 44888515 - 44888430
Alignment:
Q  45 tggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaagga 130  Q
    |||||||||||| |||| ||| | |||||||||||||  |||||||||| ||| | ||| ||||||  ||| || |||||||||||    
T  44888515 tggtatagggtgttggtggcgcgttatggtgaggaggatgggaggttggtggttgagggtcggagtgtttcttcgtggtggaagga 44888430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 154
Target Start/End: Original strand, 962737 - 962801
Alignment:
Q  90 ttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagattagggatgggat 154  Q
    |||||||  ||||| ||||||  |||||||||||||| |||  |||||| |||||||||||||||    
T  962737 ttggaggatgggggtcggagttgttcatcttggtggagggagatagtgaggattagggatgggat 962801  T

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Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 152
Target Start/End: Original strand, 14864033 - 14864101
Alignment:
Q  84 gggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagattagggatggg 152  Q
    |||||||||||||| ||||||||||||  ||| |||||||||| ||| |||| || |||| | ||||||    
T  14864033 gggaggttggaggtggggggccggagttgttcttcttggtggagggaggtagggaggattcgagatggg 14864101  T

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Target: chr7 (Bit Score: 84; Significance: 5e-40; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 8 - 151
Target Start/End: Original strand, 27218614 - 27218757
Alignment:
Q  8 atggtgttggcgaatgttggtagatagcgatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgg 107  Q
    ||||||||||||  ||||| ||||||| | ||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||| |||||||||    
T  27218614 atggtgttggcggttgttgatagatagaggtggattttggtatagggtgttggtggcgagatatggtgaggaggcagggaggttggcggttgggggccgg 27218713  T
Q  108 agtacttcatcttggtggaaggaagtagtgaagattagggatgg 151  Q
    |||   ||||||||||||||||| |||| |||||||||||||||    
T  27218714 agtgtatcatcttggtggaaggaggtagcgaagattagggatgg 27218757  T

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Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 8 - 148
Target Start/End: Original strand, 19544894 - 19545034
Alignment:
Q  8 atggtgttggcgaatgttggtagatagcgatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgg 107  Q
    |||||||||||| |||||||| ||||| ||||| ||||||||||||||| |||   |  |||||||||||||||||| |||||||||||| |||||||||    
T  19544894 atggtgttggcggatgttggtggatagagatgggttttggtatagggtgttggcgacacgatatggtgaggaggcagagaggttggaggttgggggccgg 19544993  T
Q  108 agtacttcatcttggtggaaggaagtagtgaagattaggga 148  Q
    |||  ||| |  |||||||||||  ||||||||||||||||    
T  19544994 agtggttctttgtggtggaaggatctagtgaagattaggga 19545034  T

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Target: chr7; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 9 - 152
Target Start/End: Original strand, 17504052 - 17504195
Alignment:
Q  9 tggtgttggcgaatgttggtagatagcgatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgga 108  Q
    ||||||||||  ||||| || ||||| |||||| |||||||| | ||| |||| |||||||| ||||||||||  |||||||||||||  ||||||||||    
T  17504052 tggtgttggcatatgttagttgatagagatggtctttggtatcgagtgttggtggcgagatacggtgaggaggatgggaggttggaggatgggggccgga 17504151  T
Q  109 gtacttcatcttggtggaaggaagtagtgaagattagggatggg 152  Q
    ||  ||| |  ||||||||||| ||  |||||||||| ||||||    
T  17504152 gtggttctttgtggtggaaggaggttatgaagattagagatggg 17504195  T

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Target: chr7; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 9 - 152
Target Start/End: Complemental strand, 17549162 - 17549019
Alignment:
Q  9 tggtgttggcgaatgttggtagatagcgatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgga 108  Q
    ||||||||||  ||||| || ||||| |||||| |||||||| | ||| |||| |||||||| ||||||||||  |||||||||||||  ||||||||||    
T  17549162 tggtgttggcatatgttagttgatagagatggtctttggtatcgagtgttggtggcgagatacggtgaggaggatgggaggttggaggatgggggccgga 17549063  T
Q  109 gtacttcatcttggtggaaggaagtagtgaagattagggatggg 152  Q
    ||  ||| |  ||||||||||| ||  |||||||||| ||||||    
T  17549062 gtggttctttgtggtggaaggaggttatgaagattagagatggg 17549019  T

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Target: chr7; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 8 - 110
Target Start/End: Complemental strand, 11341444 - 11341342
Alignment:
Q  8 atggtgttggcgaatgttggtagatagcgatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgg 107  Q
    |||||||||| | ||||||||  ||||  | || ||||||||||||||| |||  || || ||||||||||||||||||||||||||||| |||||||||    
T  11341444 atggtgttggaggatgttggtttatagatagggattttggtatagggtgttggctgctaggtatggtgaggaggcagggaggttggaggtcgggggccgg 11341345  T
Q  108 agt 110  Q
    |||    
T  11341344 agt 11341342  T

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Target: chr7; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 21 - 195
Target Start/End: Complemental strand, 20349598 - 20349425
Alignment:
Q  21 atgttggtagatagcgatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatctt 120  Q
    |||||||||||||| ||  | || |||||||||||| |||| ||  | |||||||||||||||||||||||||||||||||| | |||||  |||   ||    
T  20349598 atgttggtagatagagaaaggttatggtatagggtgttggtggctcggtatggtgaggaggcagggaggttggaggtagggg-caggagtggttctcttt 20349500  T
Q  121 ggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcga 195  Q
    |||||| |||  ||| |||||||||||||||||| || ||   ||||| | |||||||||| ||| |||| ||||    
T  20349499 ggtggagggagatagcgaagattagggatgggataggcgattctgaggagggttggtttgcagagagggtgtcga 20349425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 42 - 148
Target Start/End: Complemental strand, 34104091 - 34103985
Alignment:
Q  42 ttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaaga 141  Q
    ||||||||||||||| |||| ||| | || |||||||||||| ||||||||||||  |||||| |||||  ||| | ||||||||||||  |||||||||    
T  34104091 ttttggtatagggtgttggtggcgcgttacggtgaggaggcaaggaggttggaggatgggggctggagtggttcttgttggtggaaggatttagtgaaga 34103992  T
Q  142 ttaggga 148  Q
    |||||||    
T  34103991 ttaggga 34103985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 45 - 93
Target Start/End: Original strand, 8752925 - 8752973
Alignment:
Q  45 tggtatagggtgctggtagcgagatatggtgaggaggcagggaggttgg 93  Q
    ||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  8752925 tggtatagggtgctggtggcgagatatggtgaggaggctgggaggttgg 8752973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 45 - 125
Target Start/End: Original strand, 25018847 - 25018927
Alignment:
Q  45 tggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtgg 125  Q
    |||||||||||| |||| || ||||||||||||||||| |||||||||||||| ||||| || |||  ||| |||||||||    
T  25018847 tggtatagggtgttggtggcaagatatggtgaggaggctgggaggttggaggttgggggtcgaagtggttcttcttggtgg 25018927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 130
Target Start/End: Complemental strand, 17056140 - 17056055
Alignment:
Q  45 tggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaagga 130  Q
    |||||||||||| |||| ||| | |||||||||||||  |||||||||| ||| ||||||||||||  ||| || |||||||||||    
T  17056140 tggtatagggtgttggtggcgcgttatggtgaggaggatgggaggttggtggttgggggccggagtgtttcttcgtggtggaagga 17056055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 72 - 152
Target Start/End: Complemental strand, 23887667 - 23887588
Alignment:
Q  72 ggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagattagggatggg 152  Q
    |||||||||||||| ||||||||||| ||||| ||||||  ||| |||||||||| |||  ||| ||||||||||||||||    
T  23887667 ggtgaggaggcagg-aggttggaggttgggggtcggagtgtttcttcttggtggagggagatagcgaagattagggatggg 23887588  T

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Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 72 - 152
Target Start/End: Complemental strand, 23898843 - 23898764
Alignment:
Q  72 ggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagattagggatggg 152  Q
    |||||||||||||| ||||||||||| ||||| ||||||  ||| |||||||||| |||  ||| ||||||||||||||||    
T  23898843 ggtgaggaggcagg-aggttggaggttgggggtcggagtgtttcttcttggtggagggagatagcgaagattagggatggg 23898764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 45 - 135
Target Start/End: Original strand, 22819246 - 22819336
Alignment:
Q  45 tggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtag 135  Q
    |||||||||||| |||||||| | |||||||||||||   ||||||||| ||| ||||||||||||  ||| |  ||||||||||| ||||    
T  22819246 tggtatagggtgttggtagcgcgttatggtgaggaggacaggaggttggcggttgggggccggagtgtttctttgtggtggaaggaggtag 22819336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 81
Target Start/End: Original strand, 41805282 - 41805323
Alignment:
Q  40 gtttttggtatagggtgctggtagcgagatatggtgaggagg 81  Q
    ||||||||||||||||| |||| |||||||||||||||||||    
T  41805282 gtttttggtatagggtgttggtggcgagatatggtgaggagg 41805323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 93
Target Start/End: Original strand, 23054497 - 23054548
Alignment:
Q  42 ttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttgg 93  Q
    ||||||||||||||| |||  || ||| ||||||||||||||||||||||||    
T  23054497 ttttggtatagggtgttggcggctagacatggtgaggaggcagggaggttgg 23054548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 100
Target Start/End: Original strand, 39658919 - 39658972
Alignment:
Q  47 gtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagg 100  Q
    |||||||||| |||| ||| | |||||||||||||| |||||||||| ||||||    
T  39658919 gtatagggtgttggtggcgcggtatggtgaggaggctgggaggttgggggtagg 39658972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 93
Target Start/End: Original strand, 12308647 - 12308699
Alignment:
Q  41 tttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttgg 93  Q
    |||||||||||||||| |||  || || ||||||||||||||| |||||||||    
T  12308647 tttttggtatagggtgttggctgcaaggtatggtgaggaggcatggaggttgg 12308699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 4e-31; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 45 - 241
Target Start/End: Complemental strand, 2072151 - 2071955
Alignment:
Q  45 tggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagatta 144  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||| ||||| ||||| ||||||  ||| |  ||||||| |||  ||||||||||||    
T  2072151 tggtatagggtgctggtggcgagatatggtgaggaggcaaggaggttagaggttgggggacggagtgtttcttgctggtggagggagttagtgaagatta 2072052  T
Q  145 gggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggtaggtaatggtgtgtctacttacttttggtatgacaggtg 241  Q
    |||| ||| | ||||| |  |||||| | |||||||| ||| |||| ||||||| ||||||  ||||| |   |||||||||||||| |||||||||    
T  2072051 gggacggggtaggtgaggccgaggggggctggtttgcagagagggtgtcgagaaaggtaggggatggtttacatacttacttttggtctgacaggtg 2071955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 8 - 151
Target Start/End: Complemental strand, 9691070 - 9690927
Alignment:
Q  8 atggtgttggcgaatgttggtagatagcgatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgg 107  Q
    |||||||||| |  ||||||| |||||   ||| ||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||| |||||||||    
T  9691070 atggtgttggaggttgttggtggatagatgtgggttttggtatagggtgctagtagctagatatggtgaggaggctgggaggttggaggttgggggccgg 9690971  T
Q  108 agtacttcatcttggtggaaggaagtagtgaagattagggatgg 151  Q
    |||  |||   |||||||| |||  ||| |||||||||||||||    
T  9690970 agtgtttctcattggtggagggagatagcgaagattagggatgg 9690927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 8 - 152
Target Start/End: Original strand, 43516240 - 43516384
Alignment:
Q  8 atggtgttggcgaatgttggtagatagcgatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgg 107  Q
    |||||||||||  |||||||  ||||| | |||||| ||||||||||| || |||| | | |||||||||  ||| ||| |||||||||| |||||| ||    
T  43516240 atggtgttggcagatgttggcggatagaggtggtttatggtatagggtcctagtagtgcggtatggtgagacggctgggcggttggaggttgggggcagg 43516339  T
Q  108 agtacttcatcttggtggaaggaagtagtgaagattagggatggg 152  Q
    |||  |||||||||||||  |||||||| ||||||||||||||||    
T  43516340 agtgtttcatcttggtggcgggaagtagcgaagattagggatggg 43516384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 58 - 148
Target Start/End: Original strand, 52617407 - 52617497
Alignment:
Q  58 tggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagattaggga 148  Q
    |||| |||||||||||||||||||||| ||||||||||||  | |||||||||  |||||||||||||| |||  ||| ||||||||||||    
T  52617407 tggtggcgagatatggtgaggaggcagagaggttggaggttagaggccggagtgtttcatcttggtggagggagatagcgaagattaggga 52617497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 39 - 152
Target Start/End: Complemental strand, 7099099 - 7098986
Alignment:
Q  39 ggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtga 138  Q
    ||||| |||||| ||||  || |||| ||||||||||||||||  | |||||||||||  ||||||||||||  |||   |||||||||||| || ||||    
T  7099099 ggtttgtggtatcgggttttgatagctagatatggtgaggaggatgagaggttggaggatgggggccggagtggttctatttggtggaaggaggttgtga 7099000  T
Q  139 agattagggatggg 152  Q
    ||||||||||||||    
T  7098999 agattagggatggg 7098986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 45 - 148
Target Start/End: Complemental strand, 36183148 - 36183045
Alignment:
Q  45 tggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagatta 144  Q
    ||||||||||| || || || ||||||||||||||||  ||| |||||||||| ||||||||||||  |||  ||||||||| |||  ||| ||||||||    
T  36183148 tggtatagggtacttgtggcaagatatggtgaggaggatgggcggttggaggttgggggccggagtgtttctacttggtggagggagatagcgaagatta 36183049  T
Q  145 ggga 148  Q
    ||||    
T  36183048 ggga 36183045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 148
Target Start/End: Original strand, 56336993 - 56337132
Alignment:
Q  9 tggtgttggcgaatgttggtagatagcgatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgga 108  Q
    |||||||| ||  ||||||| ||||| |  ||||| ||||||||||| || |  ||||| |||||||||||||| ||| |||||||||| ||||| ||||    
T  56336993 tggtgttgtcggttgttggtggatagagtaggtttgtggtatagggtactagcggcgaggtatggtgaggaggctgggcggttggaggttgggggtcgga 56337092  T
Q  109 gtacttcatcttggtggaaggaagtagtgaagattaggga 148  Q
    ||  |||  ||||||||| |||  ||| ||||||||||||    
T  56337093 gtgtttctacttggtggagggagatagcgaagattaggga 56337132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 38296322 - 38296258
Alignment:
Q  40 gtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggc 104  Q
    ||||||||||||||||| |||| |||||||||||||||| |   |||||||||||||| ||||||    
T  38296322 gtttttggtatagggtgttggtggcgagatatggtgaggtgaatgggaggttggaggttgggggc 38296258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 152
Target Start/End: Original strand, 49925835 - 49925903
Alignment:
Q  84 gggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagattagggatggg 152  Q
    |||||||||||||| ||||||||||||  ||| |||||||||  ||| || | ||||||||||||||||    
T  49925835 gggaggttggaggttgggggccggagttgttcttcttggtggcgggaggtggggaagattagggatggg 49925903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 184
Target Start/End: Original strand, 55725198 - 55725374
Alignment:
Q  8 atggtgttggcgaatgttggtagatagcgatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgg 107  Q
    |||||||||| |  |||| |||||||| ||||| || |||||||||||| |||| || || ||||||| |||||  ||  | |||||||  |||||||||    
T  55725198 atggtgttggaggttgttagtagatagagatggattatggtatagggtgttggtggctaggtatggtgtggaggatggtggtttggaggatgggggccgg 55725297  T
Q  108 agtacttcatcttggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcgga 184  Q
    |||  ||| |||||||||| |||  |||| | ||| || |||||||| || || | || || | |||||||||||||    
T  55725298 agttgttcttcttggtggagggagatagtcatgatcagagatgggataggcgagggtggggagggttggtttgcgga 55725374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 130
Target Start/End: Complemental strand, 9777981 - 9777896
Alignment:
Q  45 tggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaagga 130  Q
    |||||||||||| |||||||| | ||| |||||||||  |||||||||  ||| ||||||||||||  ||| |  |||||||||||    
T  9777981 tggtatagggtgttggtagcgcgttatagtgaggaggatgggaggttgacggttgggggccggagtgtttctttgtggtggaagga 9777896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 97
Target Start/End: Original strand, 29328301 - 29328358
Alignment:
Q  40 gtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggt 97  Q
    |||||||||||| |||  |||| ||||| |||||||||||||  ||||||||||||||    
T  29328301 gtttttggtataaggtcttggtcgcgaggtatggtgaggaggtggggaggttggaggt 29328358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 110
Target Start/End: Complemental strand, 41382560 - 41382519
Alignment:
Q  69 tatggtgaggaggcagggaggttggaggtagggggccggagt 110  Q
    |||||||||||||| ||| |||||||||| ||||||||||||    
T  41382560 tatggtgaggaggctgggcggttggaggttgggggccggagt 41382519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 152
Target Start/End: Complemental strand, 19115008 - 19114940
Alignment:
Q  84 gggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagattagggatggg 152  Q
    |||||||||||||| ||||||| ||||  ||| |||||||||  ||| |||| || |||||||||||||    
T  19115008 gggaggttggaggttgggggccagagttgttcttcttggtggcgggaggtagggaggattagggatggg 19114940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 8 - 151
Target Start/End: Complemental strand, 6824059 - 6823916
Alignment:
Q  8 atggtgttggcgaatgttggtagatagcgatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgg 107  Q
    |||||||||| |||||||||| ||||| |  || || |||||||||||  |||  |||||||||| |||||||||||||||||||||||| |||||||||    
T  6824059 atggtgttggagaatgttggtggatagagcggggttctggtatagggttttggcggcgagatatgttgaggaggcagggaggttggaggttgggggccgg 6823960  T
Q  108 agtacttcatcttggtggaaggaagtagtgaagattagggatgg 151  Q
    |||  |||| | ||||||||||| |||| |||||||||||||||    
T  6823959 agtgtttcaccgtggtggaaggaggtagcgaagattagggatgg 6823916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 8 - 152
Target Start/End: Complemental strand, 11196999 - 11196855
Alignment:
Q  8 atggtgttggcgaatgttggtagatagcgatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgg 107  Q
    |||||||||||||||| |||| ||||| |  || || ||||||||||| ||||||||| | |||||||||   |  ||| |||||||||| |||||||||    
T  11196999 atggtgttggcgaatgatggtggatagaggcgggttatggtatagggttctggtagcgcggtatggtgagacagttgggcggttggaggttgggggccgg 11196900  T
Q  108 agtacttcatcttggtggaaggaagtagtgaagattagggatggg 152  Q
    |||  |||||||||||||  ||||||||  |||||||||||||||    
T  11196899 agtgtttcatcttggtggcgggaagtagctaagattagggatggg 11196855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 40 - 125
Target Start/End: Complemental strand, 43310875 - 43310790
Alignment:
Q  40 gtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtgg 125  Q
    |||| |||||||||||| |||| ||||||||||| |||||||  |||||||||||||| ||||||||||||  ||| |||||||||    
T  43310875 gtttgtggtatagggtgttggtggcgagatatggcgaggaggatgggaggttggaggttgggggccggagtggttcttcttggtgg 43310790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 40 - 110
Target Start/End: Complemental strand, 26146831 - 26146761
Alignment:
Q  40 gtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagt 110  Q
    |||| |||||||||||| |||| ||||||||||| |||||||  |||||||||||||| ||||||||||||    
T  26146831 gtttgtggtatagggtgttggtggcgagatatggcgaggaggatgggaggttggaggttgggggccggagt 26146761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 124
Target Start/End: Complemental strand, 10689170 - 10689087
Alignment:
Q  40 gtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtg 124  Q
    |||| |||||||||||| |||| | |||||||||||| |||||  |||||||||||||  |||||||||||  ||| ||||||||    
T  10689170 gtttatggtatagggtgttggtggtgagatatggtgatgaggctaggaggttggaggt-tggggccggagtggttcttcttggtg 10689087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 152
Target Start/End: Complemental strand, 15018249 - 15018181
Alignment:
Q  84 gggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagattagggatggg 152  Q
    |||||||||||||| |||||||| |||  ||| |||||||||  ||| |||| || |||||||||||||    
T  15018249 gggaggttggaggttgggggccgaagttgttcttcttggtggcgggaggtagggaggattagggatggg 15018181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 39 - 151
Target Start/End: Complemental strand, 6705 - 6593
Alignment:
Q  39 ggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtga 138  Q
    ||||| |||||||||||  | || ||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||| |||||||  || |||| ||    
T  6705 ggtttgtggtatagggttttagtggcgagatatggtgaggaggcagggaggttggaggttgggggctggagtgcttcatcatggtggagagaggtagcga 6606  T
Q  139 agattagggatgg 151  Q
    |||||||||||||    
T  6605 agattagggatgg 6593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 8 - 154
Target Start/End: Complemental strand, 25193736 - 25193590
Alignment:
Q  8 atggtgttggcgaatgttggtagatagcgatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgg 107  Q
    |||||| ||| | |||||||| ||||| ||||| || |||||| ||||| |||| | | | |||||||||||||| ||||||||||||||||||||||||    
T  25193736 atggtgctggaggatgttggtggatagagatgggttctggtatcgggtgttggtggtgcggtatggtgaggaggctgggaggttggaggtagggggccgg 25193637  T
Q  108 agtacttcatcttggtggaaggaagtagtgaagattagggatgggat 154  Q
    |||  ||| | |||||||| |||  ||| ||||||||||||||||||    
T  25193636 agtgattcttattggtggagggagatagcgaagattagggatgggat 25193590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 45 - 159
Target Start/End: Original strand, 29721439 - 29721553
Alignment:
Q  45 tggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagatta 144  Q
    |||||||||||  |||| |||||||||||||||||| | |||||||||||||||||||||||||||   || | |||||||| |||  ||| ||||||||    
T  29721439 tggtatagggttttggtggcgagatatggtgaggagcctgggaggttggaggtagggggccggagtgtctcttattggtggagggagatagcgaagatta 29721538  T
Q  145 gggatgggatgggtg 159  Q
    |||||||||| ||||    
T  29721539 gggatgggattggtg 29721553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 8 - 148
Target Start/End: Complemental strand, 15439765 - 15439632
Alignment:
Q  8 atggtgttggcgaatgttggtagatagcgatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgg 107  Q
    |||||||||||  ||||||||  |||| |||||||| |||||||||||| |||  |||   |||||||||||||||||||||||       |||||||||    
T  15439765 atggtgttggcagatgttggtgaatagagatggtttatggtatagggtgttgggggcgcagtatggtgaggaggcagggaggtt-------gggggccgg 15439673  T
Q  108 agtacttcatcttggtggaaggaagtagtgaagattaggga 148  Q
    ||   ||| | ||||||||||||||||||||||||||||||    
T  15439672 agcggttctttttggtggaaggaagtagtgaagattaggga 15439632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 8 - 148
Target Start/End: Complemental strand, 15531069 - 15530936
Alignment:
Q  8 atggtgttggcgaatgttggtagatagcgatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgg 107  Q
    |||||||||||  ||||||||  |||| |||||||| |||||||||||| |||  |||   |||||||||||||||||||||||       |||||||||    
T  15531069 atggtgttggcagatgttggtgaatagagatggtttatggtatagggtgttgggggcgcagtatggtgaggaggcagggaggtt-------gggggccgg 15530977  T
Q  108 agtacttcatcttggtggaaggaagtagtgaagattaggga 148  Q
    ||   ||| | ||||||||||||||||||||||||||||||    
T  15530976 agcggttctttttggtggaaggaagtagtgaagattaggga 15530936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 152
Target Start/End: Complemental strand, 6245727 - 6245593
Alignment:
Q  11 gtgttggcgaatgttggtagatagcgatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagt 110  Q
    ||||||||| |||||||| ||||| | |||  | ||||||||||| || |||||  | ||||||||| |||| ||||||||||       ||||||||||    
T  6245727 gtgttggcggatgttggtggatagaggtgggctctggtatagggttcttgtagcatgttatggtgagaaggctgggaggttgg-------gggccggagt 6245635  T
Q  111 acttcatcttggtggaaggaagtagtgaagattagggatggg 152  Q
      |||||||||||||  |||||||||||||||||||||||||    
T  6245634 gtttcatcttggtggcgggaagtagtgaagattagggatggg 6245593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 8 - 151
Target Start/End: Complemental strand, 36025169 - 36025026
Alignment:
Q  8 atggtgttggcgaatgttggtagatagcgatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgg 107  Q
    |||||||||||| |||||||| ||||| |  || || |||||||| ||  |||| |||||||||||||||||||| ||| |||||||||| |||| ||||    
T  36025169 atggtgttggcggatgttggtggatagaggagggttatggtatagagttttggtggcgagatatggtgaggaggctgggcggttggaggttggggaccgg 36025070  T
Q  108 agtacttcatcttggtggaaggaagtagtgaagattagggatgg 151  Q
    |||  |||  ||| |||||  ||  ||| |||||||||||||||    
T  36025069 agtgtttccactttgtggagagagttagcgaagattagggatgg 36025026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 45 - 148
Target Start/End: Original strand, 37165650 - 37165753
Alignment:
Q  45 tggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagatta 144  Q
    ||||||||||| ||||| ||||||||||| |||||||  ||| |||||||||| ||||||||||||  |||  ||||||||| |||  ||| ||||||||    
T  37165650 tggtatagggtactggtggcgagatatggcgaggaggatgggcggttggaggttgggggccggagtgtttctacttggtggagggagatagcgaagatta 37165749  T
Q  145 ggga 148  Q
    ||||    
T  37165750 ggga 37165753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 109
Target Start/End: Complemental strand, 36492997 - 36492928
Alignment:
Q  40 gtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggag 109  Q
    |||| |||||||||||| |||| ||||| |||||||||||||  |||||||||| ||| |||||||||||    
T  36492997 gtttatggtatagggtgttggtggcgaggtatggtgaggaggatgggaggttggcggttgggggccggag 36492928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 43 - 93
Target Start/End: Complemental strand, 12332461 - 12332411
Alignment:
Q  43 tttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttgg 93  Q
    |||||||||||||| |||| |||||||||||||||||||  ||||||||||    
T  12332461 tttggtatagggtgttggtggcgagatatggtgaggaggatgggaggttgg 12332411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 45 - 151
Target Start/End: Complemental strand, 12341178 - 12341072
Alignment:
Q  45 tggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagatta 144  Q
    |||| |||||| ||||| ||||| |||||||||||||| ||| |||||||||| ||| ||||||||  |||   |||||||| | |  ||| ||||||||    
T  12341178 tggtttagggtactggtggcgaggtatggtgaggaggctgggcggttggaggttgggagccggagtgtttctaattggtggaggtagatagcgaagatta 12341079  T
Q  145 gggatgg 151  Q
    |||||||    
T  12341078 gggatgg 12341072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 130
Target Start/End: Complemental strand, 18187794 - 18187672
Alignment:
Q  8 atggtgttggcgaatgttggtagatagcgatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgg 107  Q
    |||||||||| || |||| |||||||| | |||||| |||||||||| |||||| |   ||||||||||||||| |||| ||||||  || | |||||||    
T  18187794 atggtgttggagattgttagtagatagaggtggtttgtggtatagggagctggttgattgatatggtgaggaggtagggcggttggcagttgagggccgg 18187695  T
Q  108 agtacttcatcttggtggaagga 130  Q
    |||  ||| |  |||||||||||    
T  18187694 agtggttctttgtggtggaagga 18187672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 152
Target Start/End: Complemental strand, 6901481 - 6901413
Alignment:
Q  84 gggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagattagggatggg 152  Q
    |||||||||||||| |||||||| |||  ||| ||||||||| ||||||||| || |||| | ||||||    
T  6901481 gggaggttggaggttgggggccgaagtggttcttcttggtggcaggaagtagggaggattcgtgatggg 6901413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 148
Target Start/End: Complemental strand, 17659403 - 17659339
Alignment:
Q  84 gggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagattaggga 148  Q
    |||||||||||||| ||||||||||||  ||| |||||||||| ||| |||| |  |||||||||    
T  17659403 gggaggttggaggttgggggccggagttgttcttcttggtggagggaggtagggcggattaggga 17659339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 152
Target Start/End: Complemental strand, 36157726 - 36157658
Alignment:
Q  84 gggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagattagggatggg 152  Q
    |||||||||||||| ||||||||||||  ||| |||||||||| ||| || | || |||||| ||||||    
T  36157726 gggaggttggaggttgggggccggagttgttcttcttggtggagggaggtggcgaggattagagatggg 36157658  T

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Target: scaffold0026 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 42 - 125
Target Start/End: Complemental strand, 67694 - 67611
Alignment:
Q  42 ttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtgg 125  Q
    ||||||||||||||| || |  | || ||||||||||||||||||||||||||||| |||||| |||||  ||| |||||||||    
T  67694 ttttggtatagggtgttgatttctaggtatggtgaggaggcagggaggttggaggttgggggctggagtggttcttcttggtgg 67611  T

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Target: scaffold0061 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 40 - 110
Target Start/End: Complemental strand, 55278 - 55208
Alignment:
Q  40 gtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagt 110  Q
    |||| |||||||||||| |||| ||||||||||| |||||||  | |||||||||||| ||||||||||||    
T  55278 gtttatggtatagggtgttggtggcgagatatggcgaggaggatgagaggttggaggttgggggccggagt 55208  T

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Target: scaffold0017 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 40 - 110
Target Start/End: Original strand, 143356 - 143426
Alignment:
Q  40 gtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagt 110  Q
    |||| |||||||||||| |||| ||||||||||| |||||||  | |||||||||||| ||||||||||||    
T  143356 gtttatggtatagggtgttggtggcgagatatggcgaggaggatgagaggttggaggttgggggccggagt 143426  T

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Target: scaffold0048 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 93
Target Start/End: Original strand, 63791 - 63876
Alignment:
Q  8 atggtgttggcgaatgttggtagatagcgatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttgg 93  Q
    |||||||||||| |||||| | || |  |||  |||||||||||| ||| |||| |||||||||| ||||||||||||||||||||    
T  63791 atggtgttggcggatgttgatggacaaagataatttttggtatagagtgttggtggcgagatatgatgaggaggcagggaggttgg 63876  T

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Target: scaffold0131 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 4048 - 4095
Alignment:
Q  8 atggtgttggcgaatgttggtagatagcgatggtttttggtatagggt 55  Q
    |||||||||||| |||||||| ||||| |||||||| |||||||||||    
T  4048 atggtgttggcggatgttggtggatagagatggtttgtggtatagggt 4095  T

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Target: scaffold0029 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 134346 - 134393
Alignment:
Q  8 atggtgttggcgaatgttggtagatagcgatggtttttggtatagggt 55  Q
    |||||||||||| |||||||| ||||| |||||||| |||||||||||    
T  134346 atggtgttggcggatgttggtggatagagatggtttgtggtatagggt 134393  T

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Target: scaffold0002 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 312173 - 312220
Alignment:
Q  8 atggtgttggcgaatgttggtagatagcgatggtttttggtatagggt 55  Q
    |||||||||||| |||||||| ||||| |||||||| |||||||||||    
T  312173 atggtgttggcggatgttggtggatagagatggtttgtggtatagggt 312220  T

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Target: scaffold0002; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 327627 - 327674
Alignment:
Q  8 atggtgttggcgaatgttggtagatagcgatggtttttggtatagggt 55  Q
    |||||||||||| |||||||| ||||| |||||||| |||||||||||    
T  327627 atggtgttggcggatgttggtggatagagatggtttgtggtatagggt 327674  T

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