View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7350_low_52 (Length: 241)
Name: NF7350_low_52
Description: NF7350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7350_low_52 |
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Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 37552224 - 37552453
Alignment:
| Q |
1 |
tccaattttgaacaaggagaagtatgtgcaaatgcacatgtacatgagtggaacaaaagcaaaagcctaagcaagaaattgaagatatgtgattcagaaa |
100 |
Q |
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| T |
37552224 |
tccaattttgaacaaggagaagtatgtgcaaatgcacatgtacatgagtggaacaaaagcaaaagcctaagcaagaaattgaagatatgtgattcagaaa |
37552323 |
T |
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| Q |
101 |
atggcttgtcttcattagtataatacagtaaacatttcattaaggcaaagagacatcgtgtggtattcaatgagtaatttaatttaattgtaagcactga |
200 |
Q |
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| T |
37552324 |
atggcttgtcttcattagtataatacagtaaacatttcattaaggcaaagagacatcgtgtggtattcaatgagtaatttaatttaattgtaagcactga |
37552423 |
T |
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| Q |
201 |
aagtgcaaaaatgttttacactgatgtcca |
230 |
Q |
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| T |
37552424 |
aagtgcaaaaatgttttacactgatgtcca |
37552453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 5 - 95
Target Start/End: Original strand, 39363343 - 39363433
Alignment:
| Q |
5 |
attttgaacaaggagaagtatgtgcaaatgcacatgtacatgagtggaacaaaagcaaaagcctaagcaagaaattgaagatatgtgattc |
95 |
Q |
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| T |
39363343 |
attttgaacaaagagtagtatgtacagatgcacatgtacatgagtggaacaaaagcaaatgcctgtacaagaaattgaaggtaagtgattc |
39363433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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