View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7350_low_58 (Length: 239)
Name: NF7350_low_58
Description: NF7350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7350_low_58 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 653647 - 653425
Alignment:
| Q |
1 |
ataatattgcctttgactcaacctcacgtgaatcaagcattcaacaacaatgattctattctcttcttatagttgacctataatcatttacattaatgta |
100 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
653647 |
ataatattgcctttgactcagcctcacgtgaatcaagcattcaacaacaatgattctattctcttcttatagttgacctataatcatttacattaatgta |
653548 |
T |
|
| Q |
101 |
tttaatcatgtatgtgtatgtgtatgtatttaaattccattcattgtgtacagtaatagcacatttatttactaatattttcgacgattgcaagtctaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
653547 |
tttaatcatgtatgtgtatgtgtatgtatttaaactccattcattgtgtacagtaatagcacatttatttactaatattttcgacgattgcaagtctaac |
653448 |
T |
|
| Q |
201 |
ctttgactgtgtaggcttaaaac |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
653447 |
ctttgactgtgtaggcttaaaac |
653425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 656514 - 656418
Alignment:
| Q |
1 |
ataatattgcctttgactcaacctcacgtgaatcaagcattcaacaacaatgattctattctcttcttatagttgacctataatcatttacattaat |
97 |
Q |
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|||||||| ||||||||| | |||||||||||||||||||||||| |||| |||| ||||||||||| |||||||||||| |||||||||||||||| |
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| T |
656514 |
ataatatttcctttgactaatcctcacgtgaatcaagcattcaacgacaacgattttattctcttctcatagttgacctacaatcatttacattaat |
656418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 656370 - 656414
Alignment:
| Q |
1 |
ataatattgcctttgactcaacctcacgtgaatcaagcattcaac |
45 |
Q |
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|||||||| || |||||||| ||||||||| |||||||||||||| |
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| T |
656370 |
ataatatttcccttgactcagcctcacgtggatcaagcattcaac |
656414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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