View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7350_low_60 (Length: 238)
Name: NF7350_low_60
Description: NF7350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7350_low_60 |
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Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 3093998 - 3093763
Alignment:
| Q |
1 |
tttctggaatgaatccacccctgaatgcttcttggtccaggctctccatcctctctattgcttttgctatggcttctggggtcctttgctttggtggcaa |
100 |
Q |
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| T |
3093998 |
tttctagaatgaatccacccctgaatgcttcttggtccaggctctccatcctctctattgcttttgctatggcttctggggtcctttgctttggtggcaa |
3093899 |
T |
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| Q |
101 |
ctttgagaattgaccaatctgcatttgtaatatttgtgagcaaattaaaaataacatcaatatttatacttagaaatatatgaaggcggactatgggatc |
200 |
Q |
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| T |
3093898 |
ctttgagaattgaccaatctgcatttgtaatatttgtgagcaaattaaaaataacatcaatatttatacttagaaatatatgaaggcggactatgggatc |
3093799 |
T |
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| Q |
201 |
tcacattcgtgacaatgttgacaatctgatgtccat |
236 |
Q |
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| T |
3093798 |
tcacattcgtgacaatgttgacaatctgatgaccat |
3093763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 7 - 154
Target Start/End: Complemental strand, 3085146 - 3084999
Alignment:
| Q |
7 |
gaatgaatccacccctgaatgcttcttggtccaggctctccatcctctctattgcttttgctatggcttctggggtcctttgctttggtggcaactttga |
106 |
Q |
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|||||||||||||||| || ||||||||||| ||||| || |||||| ||||||||||||||||||||| | | || |||||||||||||||||||||| |
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| T |
3085146 |
gaatgaatccaccccttaaagcttcttggtctaggctttctatcctccctattgcttttgctatggcttgtagaatcatttgctttggtggcaactttga |
3085047 |
T |
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| Q |
107 |
gaattgaccaatctgcatttgtaatatttgtgagcaaattaaaaataa |
154 |
Q |
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| T |
3085046 |
gaattgaccaatctgcatttgtaatatttgtgagtaaattaaaaataa |
3084999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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