View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7350_low_7 (Length: 576)
Name: NF7350_low_7
Description: NF7350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7350_low_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 35 - 560
Target Start/End: Original strand, 8457630 - 8458136
Alignment:
| Q |
35 |
tggaggtgacaattactacgattttggagtgaaggaaggatataaatacacatcaatgagggttgaatctagcggaagtagctaaactcaactaaggtag |
134 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
8457630 |
tggaggtgtcaattactatgattttggagtgaaggaaggatataaatacacatcaatgagggttgaatctagcagaattagctaaactcaactaaggtag |
8457729 |
T |
|
| Q |
135 |
cgaactnnnnnnnnnnngacttggactaagtgatttgtctatattaaatgtcggatagtgtttcatataaaattacttttgtgaaagggaaccatgggaa |
234 |
Q |
| |
|
|||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||| ||||||| |
|
|
| T |
8457730 |
cgaactaaaaaaaaaagactttggactaagcgatttgtctatatttaatgtcggatagtgtttcatataaaattacttttataaaagggaacaatgggaa |
8457829 |
T |
|
| Q |
235 |
caaaatagcgaattaaaaatttgaatcccaaataagagaggtgttcacattttgtatccgatagtgcataaaacaaaattacttgaatgaaaggaaacta |
334 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8457830 |
caaaatagcgaattgaaaatttgaatcccaaataagagaggtgttcacattttgtgtccgatagtgcataaaacaaaattacttgaatgaaaggaaacta |
8457929 |
T |
|
| Q |
335 |
tgggaacaaaaaacagtacacgtttttaaaattggtaacattggttagacatttatagtaataaaatgttccaacattctcatgagttacaacattaatt |
434 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
8457930 |
tgggaacaaaaaacagtacacgtttttaaaattggtaacattggttagacatttatagtaataaaatggtccaacattctcatgagttacaa-------- |
8458021 |
T |
|
| Q |
435 |
tcaaaatcgaccatggactgtgaatgtgatgattgtgaagaaccacggctccagctagtcatcaaccgtggaaaaacatttacctactcacatgtttgaa |
534 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
8458022 |
-----------catggactgtgaatgtgatgattgtgaagaaccacggctccagctagtcatcaaccgtggaaaaacatttacctacccacatgtttgaa |
8458110 |
T |
|
| Q |
535 |
cacaatagctaacttgtacaaaataa |
560 |
Q |
| |
|
||||||| |||||||||||||||||| |
|
|
| T |
8458111 |
cacaataactaacttgtacaaaataa |
8458136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University