View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7350_low_8 (Length: 570)
Name: NF7350_low_8
Description: NF7350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7350_low_8 |
 | |
|
| [»] chr8 (4 HSPs) |
| |
|
| [»] chr7 (1 HSPs) |
| |
|
| [»] chr2 (2 HSPs) |
| |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 553; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 553; E-Value: 0
Query Start/End: Original strand, 6 - 570
Target Start/End: Original strand, 12461517 - 12462081
Alignment:
| Q |
6 |
tgagatggacatcagcaatgacagcagaaatggaagcattggagaaaaatgctacttgggaacttgtctccttaccggtcggaaagagcactgtaggttg |
105 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12461517 |
tgagatggacacaggcaatgacagcagaaatggaagcattggagaaaaatgctacttgggaacttgtctccttaccggtcggaaagagcactgtaggttg |
12461616 |
T |
|
| Q |
106 |
tagatgggtgtttactatcaaacataaggccgatggaagtgttgagaggtttaaagcgaggttagttgcaaaaggttacactcaatcctatggagttgat |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12461617 |
tagatgggtgtttactatcaaacataaggccgatggaagtgttgagaggtttaaagcgaggttagttgcaaaaggttacactcaatcctatggagttgat |
12461716 |
T |
|
| Q |
206 |
tatgaagaaacttttgcaccagttgcaaaactcaacacagtgagggtattactatcattagcagcaaatcaagattggccgctacttcaatttgatgtaa |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12461717 |
tatgaagaaacttttgcaccagttgcaaaactcaacacagtgagggtattactatcattagcagcaaatcaagattggccgctacttcaatttgatgtaa |
12461816 |
T |
|
| Q |
306 |
aaaatgcctttttacatggagatttaatagaagaagtgtatatggatcctccccctggcataccaaggtactcaaatatttctatggtgtgcaagcttaa |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12461817 |
aaaatgcctttttacatggagatttaatagaagaagtgtatatggatcctccccctggcataccaaggtactcaaatatttctatggtgtgcaagcttaa |
12461916 |
T |
|
| Q |
406 |
aaaggccctatatggattaaaacagtcaccaagagcttggtttggaaggtttactaagtctatgaagttttttggttacacacaaagtaattctgatcac |
505 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12461917 |
aaaggccctatatggattaaaacagtcaccaagagcttggtttggaaggtttactaagtctatgaagttttttggttacacacaaagtaattctgatcac |
12462016 |
T |
|
| Q |
506 |
accttgtttcttaaacataatcatggtaagatcaccgcattgataatatatgttgatgatatgat |
570 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12462017 |
accttgtttcttaaacataatcatggtaagatcaccgcattgataatatatgttgatgatatgat |
12462081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 109 - 352
Target Start/End: Original strand, 39744343 - 39744586
Alignment:
| Q |
109 |
atgggtgtttactatcaaacataaggccgatggaagtgttgagaggtttaaagcgaggttagttgcaaaaggttacactcaatcctatggagttgattat |
208 |
Q |
| |
|
|||||| ||||| || ||||| ||||| ||||||||| ||||||||| |||||| | ||||||| |||||||||||||| || ||||| || |||||| |
|
|
| T |
39744343 |
atgggtttttacaataaaacacaaggctgatggaagtattgagaggtataaagctcgcctagttgctaaaggttacactcagtcttatggtgtagattat |
39744442 |
T |
|
| Q |
209 |
gaagaaacttttgcaccagttgcaaaactcaacacagtgagggtattactatcattagcagcaaatcaagattggccgctacttcaatttgatgtaaaaa |
308 |
Q |
| |
|
|||| || ||||| || || | || |||||||| ||||| || | | ||| |||||||||| ||||||||||| || || ||||||||||| |||| |
|
|
| T |
39744443 |
caagagacgtttgcgccggtagtcaagctcaacactgtgagaatacttttgtcactagcagcaaaccaagattggcctcttctacaatttgatgtgaaaa |
39744542 |
T |
|
| Q |
309 |
atgcctttttacatggagatttaatagaagaagtgtatatggat |
352 |
Q |
| |
|
|||| || ||||||||||| | |||||||| | ||||||||| |
|
|
| T |
39744543 |
atgctttcttacatggagaaattttagaagaaatttatatggat |
39744586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 278 - 351
Target Start/End: Complemental strand, 43766236 - 43766163
Alignment:
| Q |
278 |
gattggccgctacttcaatttgatgtaaaaaatgcctttttacatggagatttaatagaagaagtgtatatgga |
351 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||||||| |||||||||| ||| |||||||||| || ||||| |
|
|
| T |
43766236 |
gattggccgttacaacaatttgatgtaaaaaatgccttcctacatggagaattattagaagaagtttacatgga |
43766163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 416 - 472
Target Start/End: Original strand, 39744659 - 39744715
Alignment:
| Q |
416 |
tatggattaaaacagtcaccaagagcttggtttggaaggtttactaagtctatgaag |
472 |
Q |
| |
|
|||||||||||||| || |||||||| |||||||||||||| || |||||||||||| |
|
|
| T |
39744659 |
tatggattaaaacaatccccaagagcatggtttggaaggttcaccaagtctatgaag |
39744715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 553; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 553; E-Value: 0
Query Start/End: Original strand, 6 - 570
Target Start/End: Original strand, 4244720 - 4245284
Alignment:
| Q |
6 |
tgagatggacatcagcaatgacagcagaaatggaagcattggagaaaaatgctacttgggaacttgtctccttaccggtcggaaagagcactgtaggttg |
105 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4244720 |
tgagatggacacaggcaatgacagcagaaatggaagcattggagaaaaatgctacttgggaacttgtctccttaccggtcggaaagagcactgtaggttg |
4244819 |
T |
|
| Q |
106 |
tagatgggtgtttactatcaaacataaggccgatggaagtgttgagaggtttaaagcgaggttagttgcaaaaggttacactcaatcctatggagttgat |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4244820 |
tagatgggtgtttactatcaaacataaggccgatggaagtgttgagaggtttaaagcgaggttagttgcaaaaggttacactcaatcctatggagttgat |
4244919 |
T |
|
| Q |
206 |
tatgaagaaacttttgcaccagttgcaaaactcaacacagtgagggtattactatcattagcagcaaatcaagattggccgctacttcaatttgatgtaa |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4244920 |
tatgaagaaacttttgcaccagttgcaaaactcaacacagtgagggtattactatcattagcagcaaatcaagattggccgctacttcaatttgatgtaa |
4245019 |
T |
|
| Q |
306 |
aaaatgcctttttacatggagatttaatagaagaagtgtatatggatcctccccctggcataccaaggtactcaaatatttctatggtgtgcaagcttaa |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4245020 |
aaaatgcctttttacatggagatttaatagaagaagtgtatatggatcctccccctggcataccaaggtactcaaatatttctatggtgtgcaagcttaa |
4245119 |
T |
|
| Q |
406 |
aaaggccctatatggattaaaacagtcaccaagagcttggtttggaaggtttactaagtctatgaagttttttggttacacacaaagtaattctgatcac |
505 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4245120 |
aaaggccctatatggattaaaacagtcaccaagagcttggtttggaaggtttactaagtctatgaagttttttggttacacacaaagtaattctgatcac |
4245219 |
T |
|
| Q |
506 |
accttgtttcttaaacataatcatggtaagatcaccgcattgataatatatgttgatgatatgat |
570 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4245220 |
accttgtttcttaaacataatcatggtaagatcaccgcattgataatatatgttgatgatatgat |
4245284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 553; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 553; E-Value: 0
Query Start/End: Original strand, 6 - 570
Target Start/End: Original strand, 40091160 - 40091724
Alignment:
| Q |
6 |
tgagatggacatcagcaatgacagcagaaatggaagcattggagaaaaatgctacttgggaacttgtctccttaccggtcggaaagagcactgtaggttg |
105 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40091160 |
tgagatggacacaggcaatgacagcagaaatggaagcattggagaaaaatgctacttgggaacttgtctccttaccggtcggaaagagcactgtaggttg |
40091259 |
T |
|
| Q |
106 |
tagatgggtgtttactatcaaacataaggccgatggaagtgttgagaggtttaaagcgaggttagttgcaaaaggttacactcaatcctatggagttgat |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40091260 |
tagatgggtgtttactatcaaacataaggccgatggaagtgttgagaggtttaaagcgaggttagttgcaaaaggttacactcaatcctatggagttgat |
40091359 |
T |
|
| Q |
206 |
tatgaagaaacttttgcaccagttgcaaaactcaacacagtgagggtattactatcattagcagcaaatcaagattggccgctacttcaatttgatgtaa |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40091360 |
tatgaagaaacttttgcaccagttgcaaaactcaacacagtgagggtattactatcattagcagcaaatcaagattggccgctacttcaatttgatgtaa |
40091459 |
T |
|
| Q |
306 |
aaaatgcctttttacatggagatttaatagaagaagtgtatatggatcctccccctggcataccaaggtactcaaatatttctatggtgtgcaagcttaa |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40091460 |
aaaatgcctttttacatggagatttaatagaagaagtgtatatggatcctccccctggcataccaaggtactcaaatatttctatggtgtgcaagcttaa |
40091559 |
T |
|
| Q |
406 |
aaaggccctatatggattaaaacagtcaccaagagcttggtttggaaggtttactaagtctatgaagttttttggttacacacaaagtaattctgatcac |
505 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40091560 |
aaaggccctatatggattaaaacagtcaccaagagcttggtttggaaggtttactaagtctatgaagttttttggttacacacaaagtaattctgatcac |
40091659 |
T |
|
| Q |
506 |
accttgtttcttaaacataatcatggtaagatcaccgcattgataatatatgttgatgatatgat |
570 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40091660 |
accttgtttcttaaacataatcatggtaagatcaccgcattgataatatatgttgatgatatgat |
40091724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 176 - 510
Target Start/End: Complemental strand, 40455002 - 40454671
Alignment:
| Q |
176 |
aaaggttacactcaatcctatggagttgattatgaagaaacttttgcaccagttgcaaaactcaacacagtgagggtattactatcattagcagcaaatc |
275 |
Q |
| |
|
|||||||||||||| || ||||| || |||||| ||||||| ||||| ||||| || || || ||||| |||||| || | | ||| |||||||||| | |
|
|
| T |
40455002 |
aaaggttacactcagtcttatggtgtagattatcaagaaacatttgcgccagtagccaagcttaacactgtgaggatacttttgtcactagcagcaaacc |
40454903 |
T |
|
| Q |
276 |
aagattggccgctacttcaatttgatgtaaaaaatgcctttttacatggagatttaatagaagaagtgtatatggatcctccccctggcataccaaggta |
375 |
Q |
| |
|
|||||||||| || || ||||||||||| |||||||| || |||||||||| | |||||| | ||||||||| | || || || || | || |
|
|
| T |
40454902 |
aagattggcctcttctacaatttgatgtgaaaaatgctttcctacatggagaaatttcagaagacatttatatggataccccaccaggtatggta---ta |
40454806 |
T |
|
| Q |
376 |
ctcaaatatttctatggtgtgcaagcttaaaaaggccctatatggattaaaacagtcaccaagagcttggtttggaaggtttactaagtctatgaagttt |
475 |
Q |
| |
|
|||||| | | ||| ||||| | || ||||| ||||||||||||||||| || |||||||| |||||||||||||| ||||||||||||||| | |
|
|
| T |
40454805 |
ttcaaatggattgaaggtttgcaaattaaagaaggctctatatggattaaaacaatctccaagagcatggtttggaaggttcactaagtctatgaagact |
40454706 |
T |
|
| Q |
476 |
tttggttacacacaaagtaattctgatcacacctt |
510 |
Q |
| |
|
||||| || | | |||||| || ||||||||||| |
|
|
| T |
40454705 |
tttggctataaagcaagtaactcagatcacacctt |
40454671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 536; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 7 - 570
Target Start/End: Complemental strand, 8190999 - 8190436
Alignment:
| Q |
7 |
gagatggacatcagcaatgacagcagaaatggaagcattggagaaaaatgctacttgggaacttgtctccttaccggtcggaaagagcactgtaggttgt |
106 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8190999 |
gagatggacacaggcaatgacagcagaaatggaagcattggacaaaaatgctacttgggaacttgtctccttaccggtcggaaagagcactgtaggttgt |
8190900 |
T |
|
| Q |
107 |
agatgggtgtttactatcaaacataaggccgatggaagtgttgagaggtttaaagcgaggttagttgcaaaaggttacactcaatcctatggagttgatt |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8190899 |
agatgggtgtttactatcaaacataaggccgatggaagtgttgagaggtttaaagcgaggttagttgcaaaaggttacactcaatcctatggagttgatt |
8190800 |
T |
|
| Q |
207 |
atgaagaaacttttgcaccagttgcaaaactcaacacagtgagggtattactatcattagcagcaaatcaagattggccgctacttcaatttgatgtaaa |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
8190799 |
atgaagaaacttttgcaccagttgcaaaactcaacacagtgagggtattactatcattagcagcaaatcaagattggccgcttattcaatttgatgtaaa |
8190700 |
T |
|
| Q |
307 |
aaatgcctttttacatggagatttaatagaagaagtgtatatggatcctccccctggcataccaaggtactcaaatatttctatggtgtgcaagcttaaa |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8190699 |
aaatgcctttttacatggagatttaatagaagaagtgtatatggatcctccccctggcataccaaggtactcaaatatttctatggtgtgcaagcttaaa |
8190600 |
T |
|
| Q |
407 |
aaggccctatatggattaaaacagtcaccaagagcttggtttggaaggtttactaagtctatgaagttttttggttacacacaaagtaattctgatcaca |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
8190599 |
aaggccctatatggattaaaacagtcaccaagagcttggtttggaaggtttactaagtctatgaagttttttggttacacgcaaagtaattctgatcaca |
8190500 |
T |
|
| Q |
507 |
ccttgtttcttaaacataatcatggtaagatcaccgcattgataatatatgttgatgatatgat |
570 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8190499 |
ccttgtttcttaaacataatcatggtaagatcaccgcattgataatatatgttgatgatatgat |
8190436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 109 - 327
Target Start/End: Complemental strand, 27515359 - 27515141
Alignment:
| Q |
109 |
atgggtgtttactatcaaacataaggccgatggaagtgttgagaggtttaaagcgaggttagttgcaaaaggttacactcaatcctatggagttgattat |
208 |
Q |
| |
|
|||||| ||||| || ||||| ||||| ||||||||| ||||||||| |||||| |||||||| |||||||||||||| || ||||| || |||||| |
|
|
| T |
27515359 |
atgggtttttacaataaaacacaaggctgatggaagtattgagaggtataaagctctcttagttgctaaaggttacactcagtcttatggtgtagattat |
27515260 |
T |
|
| Q |
209 |
gaagaaacttttgcaccagttgcaaaactcaacacagtgagggtattactatcattagcagcaaatcaagattggccgctacttcaatttgatgtaaaaa |
308 |
Q |
| |
|
|||| || ||||| || || | || |||||||| ||||| || | | ||| |||||||||||||||||||||| || || ||||||||||| |||| |
|
|
| T |
27515259 |
caagagacgtttgcgccggtagtcaagctcaacactgtgagaatacttttgtcactagcagcaaatcaagattggcctcttctacaatttgatgtgaaaa |
27515160 |
T |
|
| Q |
309 |
atgcctttttacatggaga |
327 |
Q |
| |
|
|||| || ||||||||||| |
|
|
| T |
27515159 |
atgctttcttacatggaga |
27515141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 278 - 351
Target Start/End: Original strand, 49322678 - 49322751
Alignment:
| Q |
278 |
gattggccgctacttcaatttgatgtaaaaaatgcctttttacatggagatttaatagaagaagtgtatatgga |
351 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||||||| |||||||||| ||| |||||||||| || ||||| |
|
|
| T |
49322678 |
gattggccgttacaacaatttgatgtaaaaaatgccttcctacatggagaattattagaagaagtttacatgga |
49322751 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 416 - 472
Target Start/End: Complemental strand, 27515043 - 27514987
Alignment:
| Q |
416 |
tatggattaaaacagtcaccaagagcttggtttggaaggtttactaagtctatgaag |
472 |
Q |
| |
|
|||||||||||||| || |||||||| |||||||||||||| || |||||||||||| |
|
|
| T |
27515043 |
tatggattaaaacaatccccaagagcatggtttggaaggttcaccaagtctatgaag |
27514987 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 1e-27; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 109 - 352
Target Start/End: Complemental strand, 56391116 - 56390873
Alignment:
| Q |
109 |
atgggtgtttactatcaaacataaggccgatggaagtgttgagaggtttaaagcgaggttagttgcaaaaggttacactcaatcctatggagttgattat |
208 |
Q |
| |
|
|||||| ||||| || ||||| ||||| ||||||||| ||||||||| |||||| | ||||||| |||||||||||||| || ||||| || |||||| |
|
|
| T |
56391116 |
atgggtttttacaataaaacacaaggctgatggaagtattgagaggtataaagctcgcctagttgctaaaggttacactcagtcttatggtgtagattat |
56391017 |
T |
|
| Q |
209 |
gaagaaacttttgcaccagttgcaaaactcaacacagtgagggtattactatcattagcagcaaatcaagattggccgctacttcaatttgatgtaaaaa |
308 |
Q |
| |
|
|||| || ||||| || || || || |||||||| ||||| || | | ||| |||||||||| ||||||||||| || || ||||||||||| |||| |
|
|
| T |
56391016 |
caagagacgtttgcgccggtagccaagctcaacactgtgagaatacttttgtcactagcagcaaaccaagattggcctcttctacaatttgatgtgaaaa |
56390917 |
T |
|
| Q |
309 |
atgcctttttacatggagatttaatagaagaagtgtatatggat |
352 |
Q |
| |
|
|||| || ||||||||||| | |||||||| | ||||||||| |
|
|
| T |
56390916 |
atgctttcttacatggagaaattttagaagaaatttatatggat |
56390873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 416 - 472
Target Start/End: Complemental strand, 56390800 - 56390744
Alignment:
| Q |
416 |
tatggattaaaacagtcaccaagagcttggtttggaaggtttactaagtctatgaag |
472 |
Q |
| |
|
|||||||||||||| || |||||||| |||||||||||||| || |||||||||||| |
|
|
| T |
56390800 |
tatggattaaaacaatccccaagagcatggtttggaaggttcaccaagtctatgaag |
56390744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 349
Target Start/End: Complemental strand, 23166444 - 23166387
Alignment:
| Q |
292 |
tcaatttgatgtaaaaaatgcctttttacatggagatttaatagaagaagtgtatatg |
349 |
Q |
| |
|
|||| ||||||| || ||||||||||| |||||||||||| |||||| ||||||||| |
|
|
| T |
23166444 |
tcaacttgatgtcaataatgcctttttgcatggagatttacaagaagatgtgtatatg |
23166387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 407 - 471
Target Start/End: Complemental strand, 3276500 - 3276436
Alignment:
| Q |
407 |
aaggccctatatggattaaaacagtcaccaagagcttggtttggaaggtttactaagtctatgaa |
471 |
Q |
| |
|
||||| |||||||| ||||||| || |||||||| |||||||||||||| || || |||||||| |
|
|
| T |
3276500 |
aaggcgctatatgggctaaaacaatctccaagagcctggtttggaaggttcacaaaatctatgaa |
3276436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 407 - 471
Target Start/End: Original strand, 28600252 - 28600316
Alignment:
| Q |
407 |
aaggccctatatggattaaaacagtcaccaagagcttggtttggaaggtttactaagtctatgaa |
471 |
Q |
| |
|
||||| |||||||| ||||||| || |||||||| |||||||||||||| || || |||||||| |
|
|
| T |
28600252 |
aaggcgctatatgggctaaaacaatctccaagagcctggtttggaaggttcacaaaatctatgaa |
28600316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 107 - 510
Target Start/End: Original strand, 32202576 - 32202976
Alignment:
| Q |
107 |
agatgggtgtttactatcaaacataaggccgatggaagtgttgagaggtttaaagcgaggttagttgcaaaaggttacactcaatcctatggagttgatt |
206 |
Q |
| |
|
|||||||| ||||| || ||||| || || ||||||| |||| |||| |||||| | |||| || |||||||||||||| || ||||| || |||| |
|
|
| T |
32202576 |
agatgggtttttacaattaaacacaaagctgatggaacaattgataggtataaagcacgactagtggctaaaggttacactcagtcttatggtgtagatt |
32202675 |
T |
|
| Q |
207 |
atgaagaaacttttgcaccagttgcaaaactcaacacagtgagggtattactatcattagcagcaaatcaagattggccgctacttcaatttgatgtaaa |
306 |
Q |
| |
|
|| ||||||| ||||| ||||| || || || ||||| |||||| || | | ||| |||||||||| ||||||||||| || || ||||||||||| || |
|
|
| T |
32202676 |
atcaagaaacatttgcgccagtagccaagcttaacactgtgaggatacttttgtcactagcagcaaaccaagattggcctcttctacaatttgatgtgaa |
32202775 |
T |
|
| Q |
307 |
aaatgcctttttacatggagatttaatagaagaagtgtatatggatcctccccctggcataccaaggtactcaaatatttctatggtgtgcaagcttaaa |
406 |
Q |
| |
|
|||||| || |||||||||| | |||||| | ||||||||| | || || || || | || |||||| | | ||| ||||| | || |
|
|
| T |
32202776 |
aaatgctttcctacatggagaaatttcagaagacatttatatggataccccaccaggtatggta---tattcaaatggattgaaggtttgcaaattaaag |
32202872 |
T |
|
| Q |
407 |
aaggccctatatggattaaaacagtcaccaagagcttggtttggaaggtttactaagtctatgaagttttttggttacacacaaagtaattctgatcaca |
506 |
Q |
| |
|
||||| ||||||||||||||||| || |||||||| |||||||||||||| ||||||||||||||| |||||| || | | |||||| || ||||||| |
|
|
| T |
32202873 |
aaggctctatatggattaaaacaatctccaagagcatggtttggaaggttcactaagtctatgaagacttttggctataaagcaagtaactcagatcaca |
32202972 |
T |
|
| Q |
507 |
cctt |
510 |
Q |
| |
|
|||| |
|
|
| T |
32202973 |
cctt |
32202976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 292 - 328
Target Start/End: Original strand, 17387979 - 17388015
Alignment:
| Q |
292 |
tcaatttgatgtaaaaaatgcctttttacatggagat |
328 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
17387979 |
tcaattagatgtaaacaatgcctttttacatggagat |
17388015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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