View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7350_low_9 (Length: 564)

Name: NF7350_low_9
Description: NF7350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7350_low_9
NF7350_low_9
[»] chr7 (5 HSPs)
chr7 (217-552)||(4331973-4332308)
chr7 (217-548)||(4346917-4347248)
chr7 (217-548)||(4336228-4336561)
chr7 (141-197)||(4332350-4332406)
chr7 (141-197)||(4336597-4336653)


Alignment Details
Target: chr7 (Bit Score: 295; Significance: 1e-165; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 217 - 552
Target Start/End: Complemental strand, 4332308 - 4331973
Alignment:
Q  217 aagaagttaaattagcataccgaaattatacaggggagaattgaatatgagatttaggaaaagaacacacttcatagacccaaaccaactaactcgactt 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  4332308 aagaagttaaattagcataccgaaattatacaggggagaattgaatatgagacttaggaaaagaacacacttcatagacccaaaccaactaactcgactt 4332209  T
Q  317 caaaagcctatttagtattattactaggaatgtacnnnnnnnccaaaatgttgaactgagctgctgaaccgatattgaaaccaacgagatttcagtatca 416  Q
    |||||||||||||||||||||   |||||||| ||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4332208 caaaagcctatttagtattatacataggaatggacaaaaaaaccaaaatgttgaactgagctgctgaaccgatattgaaaccaacgagatttcagtatca 4332109  T
Q  417 gttattaaccgaacggtttaataaaaagaaaaacagaactgaacttgaaccattacgaaccattatttaaggcttctgaaccatcacgaaccaaattttt 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4332108 gttattaaccgaacggtttaataaaaagaaaaacagaactgaacttgaaccattacgaaccattatttaaggcttctgaaccatcacgaaccaaattttt 4332009  T
Q  517 tacataaatatagatcacttcgaaagaaattatatt 552  Q
    ||||||||||||||||||||||||||||||||||||    
T  4332008 tacataaatatagatcacttcgaaagaaattatatt 4331973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 217 - 548
Target Start/End: Complemental strand, 4347248 - 4346917
Alignment:
Q  217 aagaagttaaattagcataccgaaattatacaggggagaattgaatatgagatttaggaaaagaacacacttcatagacccaaaccaactaactcgactt 316  Q
    ||||||||||||||||||||| |||||||||| |||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  4347248 aagaagttaaattagcataccaaaattatacatgggagaattgaatacgagactttggaaaagaacacacttcatagacccaaaccaactaactcgactt 4347149  T
Q  317 caaaagcctatttagtattattactaggaatgtacnnnnnnnccaaaatgttgaactgagctgctgaaccgatattgaaaccaacgagatttcagtatca 416  Q
    |||||||||||||||||||||   |||||||| ||       ||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||    
T  4347148 caaaagcctatttagtattatacataggaatggacaaaaaaaccaaaatgttgaactgaactgctcaaccgatattgaaaccaaccagatttcagtatca 4347049  T
Q  417 gttattaaccgaacggtttaataaaaagaaaaacagaactgaacttgaaccattacgaaccattatttaaggcttctgaaccatcacgaaccaaattttt 516  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  4347048 gttattaaacgaacggtttaataaaaagaaaaacagaactgaacttgaaccattacgaaccattattttaggcttctaaaccatcacgaaccaaattttt 4346949  T
Q  517 tacataaatatagatcacttcgaaagaaatta 548  Q
    ||||||||||||||||||||||||||||||||    
T  4346948 tacataaatatagatcacttcgaaagaaatta 4346917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 217 - 548
Target Start/End: Complemental strand, 4336561 - 4336228
Alignment:
Q  217 aagaagttaaattagcataccgaaattatacaggggagaattgaatatgagatttaggaaaagaacacacttcataga--cccaaaccaactaactcgac 314  Q
    |||||| ||||||||||||| |||||||||| |||||||||||||||||||| || ||||||||||||||||||||||  ||||||||||||||||| ||    
T  4336561 aagaaggtaaattagcatacggaaattatacgggggagaattgaatatgagactttggaaaagaacacacttcatagagacccaaaccaactaactcaac 4336462  T
Q  315 ttcaaaagcctatttagtattattactaggaatgtacnnnnnnnccaaaatgttgaactgagctgctgaaccgatattgaaaccaacgagatttcagtat 414  Q
    |||||||||||||||||||||||   |||||||| ||       ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  4336461 ttcaaaagcctatttagtattatacataggaatggacaaaaaaaccaaaatgttgaactgaactgctaaaccgatattgaaaccaacgagatttcagtat 4336362  T
Q  415 cagttattaaccgaacggtttaataaaaagaaaaacagaactgaacttgaaccattacgaaccattatttaaggcttctgaaccatcacgaaccaaattt 514  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  4336361 ccgttattaaccgaacggtttaataaaaagaaaaacagaactgaacttgaaccattacgaaccattatttaaggcttcagaaccatcacgaaccaaattt 4336262  T
Q  515 tttacataaatatagatcacttcgaaagaaatta 548  Q
    ||||||||||||||||||||||||||||||||||    
T  4336261 tttacataaatatagatcacttcgaaagaaatta 4336228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 141 - 197
Target Start/End: Complemental strand, 4332406 - 4332350
Alignment:
Q  141 ccattatacaaatcatttgtagaagatggtatataagaataactactctacaaactt 197  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  4332406 ccattatacaaatcatttgtagaagatggtatttaagaataactactctacaaactt 4332350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 141 - 197
Target Start/End: Complemental strand, 4336653 - 4336597
Alignment:
Q  141 ccattatacaaatcatttgtagaagatggtatataagaataactactctacaaactt 197  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  4336653 ccattatacaaatcatttgtagaagatggtatttaagaataactactctacaaactt 4336597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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