View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7351_high_2 (Length: 549)
Name: NF7351_high_2
Description: NF7351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7351_high_2 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 513; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 1 - 549
Target Start/End: Original strand, 26275458 - 26276006
Alignment:
| Q |
1 |
aaacttaaatgtctcaacagttacatgcaatgtatcgtacctgtatcgaagtgctacgattgcagtcgccgcaatttatatttgcaacattgagttgtga |
100 |
Q |
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|||||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
26275458 |
aaacttcaatgtctcaacagttacatgcaatgcatcgtacctgtatcgaagcgctacgattgcagtcgccgcaatttatatttgcaacattgagatgtga |
26275557 |
T |
|
| Q |
101 |
tccaagagcacgtgaatacaagtttctagccatcccaattcttcattgtcatttgcaagtttaagttggcatccaatttttcctttataaatgccagctc |
200 |
Q |
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| T |
26275558 |
tccaagagcacgtgaatacaagtttctagccaacccaattcttcattgtcatttgcaagtttatgttagtatccaatttttcctttataaatgccagctc |
26275657 |
T |
|
| Q |
201 |
agatataggtcaaacagatgtgataatttggcatccagcatagcagatttagaagcttgaattatgttgaagctacagcctacttccacaataacactcc |
300 |
Q |
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| T |
26275658 |
agatataggtcaaacagatgtgataatttggcatccagcatagcagatttagaagcttgaattatgttgaagctacagcctacttccacaataacactcc |
26275757 |
T |
|
| Q |
301 |
gaaacagatgttccatcgaatgcgcattattattgaaatatctatcattacgttctatccaagtcctccagataatgtgcagaactgctgctatcaacac |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26275758 |
gaaacagatgttccatcgaatgcgcattattattgaaatatctatcattacgttctatccaagtcctccagataatgtgcagaactgctgctatcaacac |
26275857 |
T |
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| Q |
401 |
ctgctgaacctgtttgctccaattaccaacacaactgtcaatcacattcagccaccggagcagtccgggccttggtcaatcccagtacacaacctctgcc |
500 |
Q |
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| T |
26275858 |
ctgctgaacctgtttgcttcaattaccaacacaactgtcaatcacattcagccaccggagcagtccgggccttggtcaatcccagtacacaacctctgcc |
26275957 |
T |
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| Q |
501 |
aaagcttctgcgtttctgggcagctgaagaatatatgagtggatttttc |
549 |
Q |
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| T |
26275958 |
aaagcttctgcgtttctgggcagctgaagaatatatgagtggatttttc |
26276006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 308 - 433
Target Start/End: Original strand, 39397830 - 39397955
Alignment:
| Q |
308 |
atgttccatcgaatgcgcattattattgaaatatctatcattacgttctatccaagtcctccagataatgtgcagaactgctgctatcaacacctgctga |
407 |
Q |
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|||||||| ||||| ||| |||||||||||||| | ||||||||||||||| || || |||| | |||||||||| |||||||| || || ||||| |
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| T |
39397830 |
atgttccaacgaattcgccttattattgaaataacgctcattacgttctatctaaatcttccaaaccgtgtgcagaaccgctgctattaagacttgctgc |
39397929 |
T |
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| Q |
408 |
acctgtttgctccaattaccaacaca |
433 |
Q |
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| T |
39397930 |
accgctttgctccaattaccaacaca |
39397955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 329 - 433
Target Start/End: Complemental strand, 23893301 - 23893197
Alignment:
| Q |
329 |
attattgaaatatctatcattacgttctatccaagtcctccagataatgtgcagaactgctgctatcaacacctgctgaacctgtttgctccaattacca |
428 |
Q |
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|||||||||||| | |||||||| ||||| ||| || |||| | ||||||||||||||||||| || || ||||| ||| |||||||||||||||| |
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| T |
23893301 |
attattgaaataacgctcattacgatctattcaaatcttccaaactgtgtgcagaactgctgctattaagacttgctgcaccgctttgctccaattacca |
23893202 |
T |
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| Q |
429 |
acaca |
433 |
Q |
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||||| |
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| T |
23893201 |
acaca |
23893197 |
T |
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