View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7351_high_4 (Length: 309)
Name: NF7351_high_4
Description: NF7351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7351_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 19 - 192
Target Start/End: Complemental strand, 25187774 - 25187601
Alignment:
| Q |
19 |
gtaacaaatatatttgttgcataaaaacgcttttcgaattaatgattaaattcaagttgcaaaaaatatatttcttttgacccaagttcctctctctctc |
118 |
Q |
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| T |
25187774 |
gtaacaaatatatttgttgcataaaaacgcttttggaattaatgattaaattcaagttgcaaaaaatatatttctttttacccaagttcctctctctctc |
25187675 |
T |
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| Q |
119 |
aaacttgattttgacatttattacaaagattaagcttattctattcttctaattctccaggttgtttgaaggct |
192 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25187674 |
aaacttgattttgacatttattacaaagcttaagcttattctattcttctaattctccaggttgtttgaaggct |
25187601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 239 - 298
Target Start/End: Complemental strand, 25187555 - 25187496
Alignment:
| Q |
239 |
gtgccagatgtagaaatgggattgttttctcttctctcattgccatgtctctcgattcat |
298 |
Q |
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| T |
25187555 |
gtgccagatgtagaaatgggattgttttctcttctctcattgccatgtctctcgattcat |
25187496 |
T |
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