View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7351_low_4 (Length: 318)
Name: NF7351_low_4
Description: NF7351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7351_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 54732095 - 54732388
Alignment:
| Q |
1 |
ttcaatttatagagatgacataatttaatattgacaacactatatatttatnnnnnnnncactatctaaaattgaataatttaaaatgacaacacaattt |
100 |
Q |
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| T |
54732095 |
ttcaatttatagagataacataatttaatattgacaacactatttaaaaa-----aaaacactatctaaaattgaataatttaaattgacaacacaattt |
54732189 |
T |
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| Q |
101 |
attaagtcaacacaatttcataatccatttaagttaacaccgtcattggnnnnnnnntacaaacacacattaaataaatattgtaatatcattactacga |
200 |
Q |
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| T |
54732190 |
attaagtcaacacaatttcataatccatttaagttaacaccgtcattggaaaaaaa-tacaaacacacattaaataaatattgtaatatcattactacga |
54732288 |
T |
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| Q |
201 |
aaaactacaacaaacatgtttgaccactaaaactggatttatagtacaaggagatggaggaagaactcatattcaaactgatatgaaatccaagatggtg |
300 |
Q |
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| T |
54732289 |
aaaactacaacaaacatgtttgaccactaaaact-aatttatagtacaaggagatggaggaagaactcatattcaaactgatatgaaatccaagatggtg |
54732387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 250
Target Start/End: Original strand, 30329357 - 30329423
Alignment:
| Q |
184 |
taatatcattactacgaaaaactacaacaaacatgtttgaccactaaaactggatttatagtacaag |
250 |
Q |
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| T |
30329357 |
taatatcattactacatagaactactacaaacatgtttgacaactaaaactaaatctatagtacaag |
30329423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 124
Target Start/End: Original strand, 5746975 - 5747023
Alignment:
| Q |
77 |
taatttaaaat-gacaacacaatttattaagtcaacacaatttcataat |
124 |
Q |
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| T |
5746975 |
taatttaaaatagacaacaaaatttattaattgaacacaatttcataat |
5747023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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