View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7352_high_2 (Length: 237)
Name: NF7352_high_2
Description: NF7352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7352_high_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 7726811 - 7726577
Alignment:
| Q |
1 |
tgggctttaattgttatgtattttttccaattgtgctgtgattttcatgtagtttttccgattgtactttaattgtaattccaatgatggaaccaatcat |
100 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |
|
|
| T |
7726811 |
tgggctttaatcgttatgtattttttccaattgtgctgtgattttcatgtagtttttccgattgtactttaattgtaattccaatgatggaatcaatctt |
7726712 |
T |
|
| Q |
101 |
ttgttaaccattgaaataaattgtattaaagctttcacatcaacttgttttgat----ttagtgaaccatgctaaatttttgtcttgcttgattctaccg |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
7726711 |
ttgttaaccattgaaataaattgtattaaagctttcacatcaacttgttttgatctagctagtgaaccatgctaaatttttgtcttgattgattctaccg |
7726612 |
T |
|
| Q |
197 |
gtagtcaaagaatattgaataaattctgatgatgt |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
7726611 |
gtagtcaaagaatattgaataaattctgatgatgt |
7726577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 123 - 223
Target Start/End: Complemental strand, 2255161 - 2255062
Alignment:
| Q |
123 |
gtattaaagctttcacatcaacttgttttgatttagtgaaccatgctaaatttttgtcttgcttgattctaccggtagtcaaagaatattgaataaattc |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||| || ||||||||||||||||| || |||||||||||||| |||||||||||| |
|
|
| T |
2255161 |
gtattaaagctttcacatcaacttgttttgattatgtgaaccatgctgaa-ttttgtcttgcttgattttattggtagtcaaagaatgttgaataaattc |
2255063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University