View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7352_low_1 (Length: 495)
Name: NF7352_low_1
Description: NF7352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7352_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 9 - 479
Target Start/End: Complemental strand, 49590589 - 49590119
Alignment:
| Q |
9 |
tggtgttggctattatgtgcagattttacaagttcagtttagtgcctgatcatcaagtgagatatagaatgatgactattttatcaatggcacatggatt |
108 |
Q |
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| T |
49590589 |
tggtgttggctattatgtgcagattttacaagttcagtttagtgcctgatcatcaagtgagatatagaatgatgactattttatcaatggcacatggatt |
49590490 |
T |
|
| Q |
109 |
aaaggttaccctagagaaacgttcttgagaccaattgactcattgattcgattagtaacatatgtcgaacaatgagataaaaacttcatgtggattgtat |
208 |
Q |
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| T |
49590489 |
aaaggttaccgtagagaaacgttcttgagaccaattgactcattgattcgattagtaacatatgtcgaacaatgagataaaaacttcatgtggattgtat |
49590390 |
T |
|
| Q |
209 |
tttaatacataaatgtagttctaaatcataatagttatagtggataagcgttgaatctgagaatggtcagaaattgatcaaacgtttgctttatatgtac |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
49590389 |
tttaatacataaatgtagttctaaatcataatagttatagtggataagcgttgaatctgagaatggtcagaaattgatcaaacgtttgctttatatttac |
49590290 |
T |
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| Q |
309 |
tgtaacataaactactgttttaagttgcaaatggcaatcatgaggtgtatgttctctttgttttataactaatgctaataataacaatgctttcttgtga |
408 |
Q |
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| T |
49590289 |
tgtaacataaactactgttttaggttgcaaatggcaatcatgaggtgtatgttctctttgttttataactaatgctaataataacaatgctttcttgtga |
49590190 |
T |
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| Q |
409 |
tgatgtactcctgagttgagtgtattgtactattgtcttacaaaatacaataggataaaatggaattagtg |
479 |
Q |
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| T |
49590189 |
tgatgtactcgtgagttgagtgtattgtactattgtcttacaaaatacaataggataaaatggaattagtg |
49590119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 102; Significance: 2e-50; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 9 - 138
Target Start/End: Original strand, 7237821 - 7237950
Alignment:
| Q |
9 |
tggtgttggctattatgtgcagattttacaagttcagtttagtgcctgatcatcaagtgagatatagaatgatgactattttatcaatggcacatggatt |
108 |
Q |
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|||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
7237821 |
tggtgttggctattttgtgcagattttacaagttcaatttggtgcctgatcatcaagtgaaatatagaatgatgactattttatcaatggcacatggatt |
7237920 |
T |
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| Q |
109 |
aaaggttaccctagagaaacgttcttgaga |
138 |
Q |
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| T |
7237921 |
aagggttaccgttgagaaacgttcttgaga |
7237950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 9 - 138
Target Start/End: Original strand, 7242273 - 7242402
Alignment:
| Q |
9 |
tggtgttggctattatgtgcagattttacaagttcagtttagtgcctgatcatcaagtgagatatagaatgatgactattttatcaatggcacatggatt |
108 |
Q |
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|||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
7242273 |
tggtgttggctattttgtgcagattttacaagttcaatttggtgcctgatcatcaagtgaaatatagaatgatgactattttatcaatggcacatggatt |
7242372 |
T |
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| Q |
109 |
aaaggttaccctagagaaacgttcttgaga |
138 |
Q |
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| T |
7242373 |
aagggttaccgttgagaaacgttcttgaga |
7242402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 144 - 240
Target Start/End: Original strand, 7237983 - 7238082
Alignment:
| Q |
144 |
tgactcattgattcgattagtaacatatgtcgaacaatgagataaaaacttcatgtggattgtattttaatacat---aaatgtagttctaaatcataat |
240 |
Q |
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|||||||||||||| |||||||||| |||| ||| ||||| ||| |||||| |||| ||| |||||| |||||| |||||||||||||||||||||| |
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| T |
7237983 |
tgactcattgattcaattagtaacagatgttgaataatgacctaagaacttcttgtgaattatatttttatacataaaaaatgtagttctaaatcataat |
7238082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 144 - 240
Target Start/End: Original strand, 7242435 - 7242534
Alignment:
| Q |
144 |
tgactcattgattcgattagtaacatatgtcgaacaatgagataaaaacttcatgtggattgtattttaatacat---aaatgtagttctaaatcataat |
240 |
Q |
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|||||||||||||| |||||||||| |||| ||| ||||| ||| |||||| |||| ||| |||||| |||||| |||||||||||||||||||||| |
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| T |
7242435 |
tgactcattgattcaattagtaacagatgttgaataatgacctaagaacttcttgtgaattatatttttatacataaaaaatgtagttctaaatcataat |
7242534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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