View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7352_low_2 (Length: 311)

Name: NF7352_low_2
Description: NF7352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7352_low_2
NF7352_low_2
[»] chr5 (3 HSPs)
chr5 (16-193)||(15149415-15149592)
chr5 (194-298)||(24180033-24180137)
chr5 (194-298)||(24180662-24180765)
[»] chr4 (3 HSPs)
chr4 (194-308)||(52255127-52255241)
chr4 (17-117)||(16948827-16948927)
chr4 (194-238)||(52255404-52255448)
[»] chr6 (2 HSPs)
chr6 (227-297)||(18243242-18243312)
chr6 (194-227)||(18242709-18242742)
[»] chr7 (1 HSPs)
chr7 (194-298)||(48714819-48714923)
[»] chr2 (1 HSPs)
chr2 (29-120)||(38592063-38592154)


Alignment Details
Target: chr5 (Bit Score: 158; Significance: 4e-84; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 16 - 193
Target Start/End: Complemental strand, 15149592 - 15149415
Alignment:
Q  16 catatcatttcttataattttagcttacgtttgttgcgataagattgggtatccaacggagcatcctatatttcatccatcgatattcaattagtttgtt 115  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  15149592 catatcatttcttataattttagcctacgtttattgcgataagattgagtatccaatggagtatcctatatttcatccatcgatattcaattagtttgtt 15149493  T
Q  116 tcctcaatatttgtatttgtagttattgagggttggtttctttttaatcttatacaagagtctttgaacgattggctc 193  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15149492 tcctcaatatttgtatttgtagttattgagggttggtttctttttaatcttatacaagagtctttgaacgattggctc 15149415  T

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Target: chr5; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 194 - 298
Target Start/End: Original strand, 24180033 - 24180137
Alignment:
Q  194 gagagaaattaatattaaccattggatataattgtacggtgcagattgaaaagctcatgaaaaaagtaattgcacgtgattctattttcctaccctttct 293  Q
    ||||| |||| ||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |    
T  24180033 gagaggaattgatattaaccattggatataatcgtacggtgcagattcaaaagctcatggaaaaagtaattgcacgtgattctattttcctacccttttt 24180132  T
Q  294 ccttc 298  Q
    |||||    
T  24180133 ccttc 24180137  T

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Target: chr5; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 194 - 298
Target Start/End: Complemental strand, 24180765 - 24180662
Alignment:
Q  194 gagagaaattaatattaaccattggatataattgtacggtgcagattgaaaagctcatgaaaaaagtaattgcacgtgattctattttcctaccctttct 293  Q
    ||||| |||||||||||||||||| ||||||| |||||||||||||| |||| |||||| ||||||||||||||| ||||| || |||||||||||||||    
T  24180765 gagaggaattaatattaaccattgaatataatcgtacggtgcagattcaaaaactcatggaaaaagtaattgcacatgattata-tttcctaccctttct 24180667  T
Q  294 ccttc 298  Q
    |||||    
T  24180666 ccttc 24180662  T

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Target: chr4 (Bit Score: 87; Significance: 1e-41; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 194 - 308
Target Start/End: Original strand, 52255127 - 52255241
Alignment:
Q  194 gagagaaattaatattaaccattggatataattgtacggtgcagattgaaaagctcatgaaaaaagtaattgcacgtgattctattttcctaccctttct 293  Q
    ||||| |||||||||||||||||| ||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  52255127 gagaggaattaatattaaccattgaatataatcgtacggtgcagattcaaaagctcatggaaaaagtaattgcacgtgattctattttcctaccctttct 52255226  T
Q  294 ccttcatctcactcg 308  Q
    ||||| |||| ||||    
T  52255227 ccttcctctctctcg 52255241  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 117
Target Start/End: Complemental strand, 16948927 - 16948827
Alignment:
Q  17 atatcatttcttataattttagcttacgtttgttgcgataagattgggtatccaacggagcatcctatatttcatccatcgatattcaattagtttgttt 116  Q
    ||||||||||  |||||||||||||| ||| |||  |||||||||| | ||| ||| |||  |||||||| || | |||| |||| ||||||||||||||    
T  16948927 atatcatttcccataattttagcttatgttggttatgataagattgagaatcgaactgagtttcctatatctccttcatccatatccaattagtttgttt 16948828  T
Q  117 c 117  Q
    |    
T  16948827 c 16948827  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 238
Target Start/End: Complemental strand, 52255448 - 52255404
Alignment:
Q  194 gagagaaattaatattaaccattggatataattgtacggtgcaga 238  Q
    ||||| |||||||||||||||||| ||||||| ||||| ||||||    
T  52255448 gagaggaattaatattaaccattgtatataatcgtacgatgcaga 52255404  T

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Target: chr6 (Bit Score: 67; Significance: 9e-30; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 227 - 297
Target Start/End: Complemental strand, 18243312 - 18243242
Alignment:
Q  227 gtacggtgcagattgaaaagctcatgaaaaaagtaattgcacgtgattctattttcctaccctttctcctt 297  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18243312 gtacggtgcagattcaaaagctcatgaaaaaagtaattgcacgtgattctattttcctaccctttctcctt 18243242  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 227
Target Start/End: Original strand, 18242709 - 18242742
Alignment:
Q  194 gagagaaattaatattaaccattggatataattg 227  Q
    ||||| ||||||||||||||||||||||||||||    
T  18242709 gagaggaattaatattaaccattggatataattg 18242742  T

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Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 194 - 298
Target Start/End: Original strand, 48714819 - 48714923
Alignment:
Q  194 gagagaaattaatattaaccattggatataattgtacggtgcagattgaaaagctcatgaaaaaagtaattgcacgtgattctattttcctaccc-tttc 292  Q
    ||||| |||||||||| ||||||||||| ||| ||| |||||||||| |||||||||  | |||||||||||||| |||||||| |||||||||| ||||    
T  48714819 gagaggaattaatattgaccattggataaaatcgtaaggtgcagattcaaaagctcaacacaaaagtaattgcacatgattcta-tttcctacccatttc 48714917  T
Q  293 tccttc 298  Q
    ||||||    
T  48714918 tccttc 48714923  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 120
Target Start/End: Complemental strand, 38592154 - 38592063
Alignment:
Q  29 ataattttagcttacgtttgttgcgataagattgggtatccaacggagcatcctatatttcatccatcgatattcaattagtttgtttcctc 120  Q
    ||||||||| |||| |||  ||| |||||||||| ||||| ||  ||| |||||||||||| |||||  ||||||| |||||||||||||||    
T  38592154 ataattttaacttatgttgattgtgataagattgagtatctaattgagtatcctatatttcctccattcatattcatttagtttgtttcctc 38592063  T

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